Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme28140g00001 CTTGCAGCTATTCTTGGAGATTTCTTTGTTGGCATTGGTATCGGTTTTGAAAACTCTGCCGGAGCACACAAGCATCAAGCAGTTGCATTGAGAGTCCAAGCTGACAGATCAATCTTCTACAAATGCAGAATGGATGGTTACCAAGATACACTTTACGCACACACCATGCGTCAATTCTATCGCGATTGTGTTATCACAGGTACCATTGATTTCGTCTTTGGTGATTCCGTTGCTGTTCTCCAAAACTGCACTTTCGTAGTCCGAAAGCCATTGGAAAACCAACAATGCATTGTAACTGCACAAGGTAGGAAGGAAAAAACTCAACCATCAGGATTAATCATCCAAGGAGGTTCAATTGTGTCAGATCCTAAATACTATCCAGTTAGGTTCGACAACAAAGCTTATCTCGCTCGTCCATGGAAGAATTACTCAAGAACTATCTTCATGGATACATACATTGGTGATTTGATTACACCTGATGGTTATATGCCATGGCAAACACTAGAAGGTATCACAGGAACTGATACATGTTACTATGCTGAGTACAATAACCGTGGTCCTGGTTCCGATGTTTCCAAGCGCGTAAAATGGCAAGGTGTTAAGACTATTACTTCACAAGGAGCAGCTGGTTTCCAACCAACAGCATTCTTCCATGGAGATGATTGGATTAGGGTTACAAGAGTTCCTTATTATCCAGGAGGTGCAGGAGCTTCTCATAAAACACCAACTCATTGA 735 0.419 LAAILGDFFVGIGIGFENSAGAHKHQAVALRVQADRSIFYKCRMDGYQDTLYAHTMRQFYRDCVITGTIDFVFGDSVAVLQNCTFVVRKPLENQQCIVTAQGRKEKTQPSGLIIQGGSIVSDPKYYPVRFDNKAYLARPWKNYSRTIFMDTYIGDLITPDGYMPWQTLEGITGTDTCYYAEYNNRGPGSDVSKRVKWQGVKTITSQGAAGFQPTAFFHGDDWIRVTRVPYYPGGAGASHKTPTH 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme28140g00001 244 FunFam Pectinesterase 4 2 234 - -
Trme28140g00001 244 SUPERFAMILY Pectin lyase-like 3 232 IPR011050 -
Trme28140g00001 244 ProSitePatterns Pectinesterase signature 2. 65 74 IPR033131 -
Trme28140g00001 244 Gene3D - 2 234 IPR012334 -
Trme28140g00001 244 Pfam Pectinesterase 3 220 IPR000070 GO:0030599|GO:0042545
Trme28140g00001 244 PANTHER PECTINESTERASE 3 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme28140g00001 Trme-Chr28140 470 1204 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme28140g00001 3 230 Carbohydrate Esterase AT5G49180 54.386 2.76e-91 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme28140g00001 K01051 - gmx:100801686 437.958