Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme28121g00001 AAAATTAAGCTTGAGAGAGGCGTGGATATTGTTATTGGCACACCGGGCCGCATAAAGGATCATATAGAGCGGGGAAGTATTGACCTAAGCCAACTAAAGTTCCGTGTCCTCGATGAAGCAGATGAGATGCTGAGGATGGGTTTTGTTGAAGATGTTGAACTGATTCTTGGTAAGGTGAAAAATGTAGGTAAAGTTCAGACACTTCTTTTCAGTGCTACTTTGCCAGATTGGGTTAAGGATATTGCTAAAAGATTTCTTAAGCCAGATAAGGAAACTGCTGACCTTGTTGGAAATACAAAAATGAAAGCTAGTACTAGCGTACGGCATATTATTCTTCCCTGTTCGGGTTCTGCTAGGTCCCAACTTATTCCAGATATTATTCGATGTTACAGCAGTGGAGGTCGAACAATTATATTCACNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNGCTCTCCATGGCGACATACAGCAAGCACAACGTGAGGTTACCTTGTCTGGCTTCAGGTCTGGGAAATTCATGACATTAGTTGCCACAAATGTGGCAGCGCGGGGTCTTGATATTAATGACGTTCA 596 0.3893 KIKLERGVDIVIGTPGRIKDHIERGSIDLSQLKFRVLDEADEMLRMGFVEDVELILGKVKNVGKVQTLLFSATLPDWVKDIAKRFLKPDKETADLVGNTKMKASTSVRHIILPCSGSARSQLIPDIIRCYSSGGRTIIFTXXXXXXXXXXXXXXXXXALHGDIQQAQREVTLSGFRSGKFMTLVATNVAARGLDINDV 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme28121g00001 198 Gene3D - 94 198 IPR027417 -
Trme28121g00001 198 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 6 198 - -
Trme28121g00001 198 CDD DEADc 1 87 - -
Trme28121g00001 198 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 80 198 IPR001650 -
Trme28121g00001 198 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 92 IPR014001 -
Trme28121g00001 198 Pfam Helicase conserved C-terminal domain 126 198 IPR001650 -
Trme28121g00001 198 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 198 IPR027417 -
Trme28121g00001 198 Pfam DEAD/DEAH box helicase 3 80 IPR011545 GO:0003676|GO:0005524
Trme28121g00001 198 Coils Coil 158 169 - -
Trme28121g00001 198 Gene3D - 1 92 IPR027417 -
Trme28121g00001 198 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 36 44 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme28121g00001 Trme-Chr28121 20 1206 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme28121g00001 4 198 Eukaryotic Initiation Factors Gene Family AT1G72730 29.146 6.66e-18 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme28121g00001 K16911 - gmx:100820207 318.931