Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme280g00001 ATGCTCCTCTCAAGGTCTCAGGCCACTGCTGCCAATCCCATTGTCGGTTCCCAGGTTTGGGTGGAGGACTCAGATGTAGCTTGGATAGATGGCGAGGTCTTGGAGGTTAATGGGGATGAAATAAAAGTCCTTTGCACTTCAGGGAAGACGATTGCTGTTAAAGCTTCCAGTGTTTATCATAAAGATACAGAAGCCCCACCATGTGGAGTTGATGATATGACAAAGCTTGCTTACCTGCATGAACCTGGTGTCCTAGATAATCTTAGATCAAGATATGACATCAATGAAATTTATACTTACACTGGGAATATATTAATCGCTGTGAACCCTTTCATAAAGCTTCCTCATTTATATGATAGCCATATGATGGCACAATATAAAGGAGCAGGCTTTGGTGAGCTAAGCCCACATCCTTTTGCTATTGCTGACTCAGCATATAGGCTTATGATCAATGAGGGAATCAGCCAGTCAATATTGGTTAGTGGTGAAAGTGGGGCTGGTAAAACAGAAAGCACAAAGTTACTTATGCGCTACCTTGCTTACATGGGAGGGAGAGCTAATGTTGCTGAAGGTAGAACTGTTGAGCAGAAAGTCCTGGAGTCCAATCCTGTTCTAGAAGCCTTTGGAAATGCAAAGACTGTTAGAAACAATAATTCAAGTCGTTTTGGTAAGTTTGTGGAGATTCAATTTGACCAGAAGGGAAGAATTTCTGGAGCTGCTATCAGAACTTACCTGCTGGAAAGATCACGTGTTTGCCAGTTGTCGGATCCAGAGAGGAATTATCACTGTTTCTATATGCTTTGTGCTGCACCTCCAGAGGTTGTTCAGAAGTACAAATTAGGAAACCCAAGAACCTTTCATTATCTAAATCAAACAAATTGCTATGAGTTGGAAGGGTATGATGAGTATAAAGAATATTGTGATACAAGGAGAGCAATGGATGTTGTTGGAATAAGTTCTGAGGAGCAGGAAGCAATATTTCGAGTGGTTGCTGCAATTTTACATCTTGGCAACATTGAATTTTCAAAAGGAAAGGAAATGGACTCGTCTATGCCCAAAGATGAAAAATCAAAGTTTCACCTACAGACTGCAGCTGAACTTTTCATGTGTGATGCAAAGGCACTAGAAGATTCTCTTTGCAAGCGTGTAATTGTTACTCGTGATGAAACTATTGTAAAATGCCTGGATCCAGAAGCTGCTACACTGAGCCGAGATGCTTTAGCTAAGGTTGTGTACTCGAGGTTGTTTGACTGGCTGGTAGATAAAATTAATAATTCAATTGGTCAGGATCCTGACTCAAAGTCCTTAATCGGCGTGCTGGATATTTATGGTTTTGAGAGTTTCAAGACTAACAGTTTTGAGCAATTCTGTATTAATTTGACCAATGAAAAGCTCCAGCAACATTTTAATCAGCATGTTTTCAAAATGGAGCAAGAAGAATACAAGAAAGAGGAGATTGATTGGAGTTACATTGAATTTGTTGACAATCAAGATATTTTGGATCTCATTGAAAAGGGTGAGGGTTGTAAAAGTTGGTTGGGTCTCAAATAG 1551 0.4017 MLLSRSQATAANPIVGSQVWVEDSDVAWIDGEVLEVNGDEIKVLCTSGKTIAVKASSVYHKDTEAPPCGVDDMTKLAYLHEPGVLDNLRSRYDINEIYTYTGNILIAVNPFIKLPHLYDSHMMAQYKGAGFGELSPHPFAIADSAYRLMINEGISQSILVSGESGAGKTESTKLLMRYLAYMGGRANVAEGRTVEQKVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQKGRISGAAIRTYLLERSRVCQLSDPERNYHCFYMLCAAPPEVVQKYKLGNPRTFHYLNQTNCYELEGYDEYKEYCDTRRAMDVVGISSEEQEAIFRVVAAILHLGNIEFSKGKEMDSSMPKDEKSKFHLQTAAELFMCDAKALEDSLCKRVIVTRDETIVKCLDPEAATLSRDALAKVVYSRLFDWLVDKINNSIGQDPDSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYKKEEIDWSYIEFVDNQDILDLIEKGEGCKSWLGLK 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme280g00001 516 PRINTS Myosin heavy chain signature 203 230 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trme280g00001 516 PRINTS Myosin heavy chain signature 436 464 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trme280g00001 516 PRINTS Myosin heavy chain signature 155 180 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trme280g00001 516 PRINTS Myosin heavy chain signature 489 516 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trme280g00001 516 PRINTS Myosin heavy chain signature 98 117 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trme280g00001 516 Gene3D - 453 514 - -
Trme280g00001 516 Pfam Myosin head (motor domain) 70 508 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trme280g00001 516 Gene3D Myosin VI head, motor domain, U50 subdomain 319 452 - -
Trme280g00001 516 Gene3D Kinesin motor domain 18 298 IPR036961 -
Trme280g00001 516 PANTHER MYOSIN 63 506 - -
Trme280g00001 516 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 14 63 IPR004009 GO:0003774|GO:0005524|GO:0016459
Trme280g00001 516 ProSiteProfiles Myosin motor domain profile. 68 516 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trme280g00001 516 FunFam Myosin 2 319 432 - -
Trme280g00001 516 FunFam Myosin heavy chain 259 314 - -
Trme280g00001 516 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 41 506 IPR027417 -
Trme280g00001 516 Pfam Myosin N-terminal SH3-like domain 16 58 IPR004009 GO:0003774|GO:0005524|GO:0016459
Trme280g00001 516 SMART MYSc_2a 63 516 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme280g00001 Trme-Chr280 607 4743 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme280g00001 12 508 Myosins gene family AT5G43900 83.501 0.0 876
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme280g00001 K10357 - gmx:100791070 944.11