Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme280969g00001 AAGGCTAAGATCCAGGATAAGGAAGGTATTCCCCCAGATCAGCAGAGGTTGATCTTTGCAGGCAAACAGTTGGAAGATGGAAGGACCCTTGCGGATTACAATATCCAGAAGGAGTCCACTCTTCACCTTGTGCTGCGTTTGAGGGGTGGTATGCAGATTTTTGTTAAGACCTTGACTGGTAAGACTATTACCCTGGAGGTGGAAAGCTCAGATACCATTGATAATGTGAAGGCCAAAATTCAGGATAAGGAAGGTATCCCACCGGATCAGCAGAGGTTGATCTTTGCAGGGAAACAGTTGGAGGATGGAAGGACCCTTGCTGACTACAACATTCAGAAGGAGTCCACCCTTCACCTT 357 0.4706 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme280969g00001 119 FunFam Polyubiquitin 52 119 - -
Trme280969g00001 119 ProSitePatterns Ubiquitin domain signature. 77 102 IPR019954 -
Trme280969g00001 119 PRINTS Ubiquitin signature 61 81 IPR019956 -
Trme280969g00001 119 PRINTS Ubiquitin signature 103 119 IPR019956 -
Trme280969g00001 119 PRINTS Ubiquitin signature 82 102 IPR019956 -
Trme280969g00001 119 SUPERFAMILY Ubiquitin-like 50 119 IPR029071 -
Trme280969g00001 119 ProSitePatterns Ubiquitin domain signature. 1 26 IPR019954 -
Trme280969g00001 119 SUPERFAMILY Ubiquitin-like 1 50 IPR029071 -
Trme280969g00001 119 Gene3D - 1 50 - -
Trme280969g00001 119 Pfam Ubiquitin family 1 48 IPR000626 GO:0005515
Trme280969g00001 119 Pfam Ubiquitin family 53 119 IPR000626 GO:0005515
Trme280969g00001 119 Gene3D - 51 119 - -
Trme280969g00001 119 PANTHER UBIQUITIN 51 119 - -
Trme280969g00001 119 ProSiteProfiles Ubiquitin domain profile. 1 50 IPR000626 GO:0005515
Trme280969g00001 119 FunFam Putative Polyubiquitin-C 1 51 - -
Trme280969g00001 119 SMART ubq_7 1 46 IPR000626 GO:0005515
Trme280969g00001 119 SMART ubq_7 51 119 IPR000626 GO:0005515
Trme280969g00001 119 ProSiteProfiles Ubiquitin domain profile. 51 119 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme280969g00001 Trme-Chr280969 1 357 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme280969g00001 1 51 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.039 2.68e-31 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme280969g00001 K08770 - pvy:116145339 235.343