Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme28080g00001 GGCTTTGACCATTTGAGGTGCCATCTGGACTATTACTATGCATCTGTGTGGCATCCTGAAGGGTATAAGTTCGCCACAGGAAATCAAGACAGGAGTTGTCGCGTGTGGGATGCTCGGAATGTTGGACATCCTTTGTTCCTTCTCAAGGGCAATATAGGAGCAACCAATGCCATTCGTTTCAGCTCAGATGGGAAGTTTATGGCGATGGAGGAATCTGTCGATTATGTCCACATATACGATGTTGAAAGAGAGTTTGAGTTTCAGCAAGAAATTGATTTCTTTGGGAATACATCAGGAATATCATTTAGTCCCGACACTCAGTCGTTCTTCATCGGTATCTCTCTGTGCCCAAACCATGACACAAATTTCTTTCTTTTACGGATACTAGTTTTTCAAGTTTTACATTTTGCTGGTTCATGTCTTTATGTCCTGATCTGA 438 0.4224 GFDHLRCHLDYYYASVWHPEGYKFATGNQDRSCRVWDARNVGHPLFLLKGNIGATNAIRFSSDGKFMAMEESVDYVHIYDVEREFEFQQEIDFFGNTSGISFSPDTQSFFIGISLCPNHDTNFFLLRILVFQVLHFAGSCLYVLI 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme28080g00001 145 Gene3D - 2 133 IPR015943 GO:0005515
Trme28080g00001 145 SUPERFAMILY TolB, C-terminal domain 6 113 - -
Trme28080g00001 145 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 5 40 - -
Trme28080g00001 145 ProSiteProfiles Trp-Asp (WD) repeats profile. 5 40 IPR001680 GO:0005515
Trme28080g00001 145 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 4 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme28080g00001 Trme-Chr28080 347 784 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme28080g00001 12 114 U-box Gene Family AT2G33340 25.243 6.28e-07 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme28080g00001 - - oeu:111368191 163.31