Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2806g00001 TCTGGTATTCAAAGCCTTTCTTTCAGTGTGCAAAGTACTCCTGAAAAAAATGGCCATTCAGATGATGCTTCAAGAAGTTCAGAACTCTTTCAGGAGTTCATGAAATATGGTCCAAAGAAGGAACTTCTTCAAACGTGCTTTGATAAGGACAAAAAGAACATGTCTTCAAAAAACAGGATGACTGAAGCCAAGTCATCTGGTAAGATGATTAAGAAACAAGACACAAAAAAGGTTTCTAGTCTTAATCGTCAGCCCTCAAAAAAGCAAAATCGGAAGAGTGAAAACCCTATCCGAGTTGTACCTCCTCCTAACCAGGCTTCTGATTTTGGACATCCGAGCACTTGGATCTGTAAAAATGCTGCTTGTAGGGCGGTTCTATCGGTGGATGACACATTTTGTAGACGGTGTTCTTGCTGTATCTGTCACCTTTTTGATGATAACAAGGATCCTAGTCTTTGGTTAGTATGCACATCTGAATCTACTCAAGGGGACTCCTGTGAGTTGTCTTGCCACATCGAATGTGCCCTTCAACATGAAAAAGTGGGAGTTGTTGATCATGGGCAACTGATGCAACTGGATGGTGGTTATTGTTGTGCATCCTGTGGTAAAGTTACTGGGATACTTGGTTTTGCTACCTTGATGTCTCTTTTGAAGAGGAACAGTATTATGACCTTGTTCACTTCCCTTGCTACCATTTGCAACGTATGCTGGAAGAAACAACTGAATATTGCAAAAGATGCCCGGCGTGTAGATGTACTCTGTTATAGAATATATTTGAGCTACAGGCTCCTGAATGGAACTTCAAAATTTAAAGACCTGCATCTAATGGTACATGAGGCAAAGGCTAAACTGGAGACAGAAGTTGGTCCTCTTGATGGAGTTTCTGCCAAAATGGCACGAGGCATCGTCAGTAGACTCCCTATTGCCAGTGATGTGCAGAGACTCTGCACTCTTGCTATTGAGAAAGCTGACAGCTGGCTGGCCATTGTTCCCAATTTAAATTCAGAGGGTTCACTTCCTGCTGCTTGCAAATTTGTTTTTGAAGAGGTAACAGCTTCTTCTGTCAAAATCATTTTAATTGAAATGTCAAATATATGTTCTGAGGACATCAAGGGGTACAAGCTATGGTATTACAAGAGTTGGGATGAACCACCCACAAAGGATCCTGTTTCTGTGTTTCCCAAATCTCAGAGGAGGATTTTGATATCCGACCTTCAACCTTGCACAGAATATACTTTTCGGATTATATCTTACACTGCCATGGGTGACCTGGGTCATTCCGAGGCTAAGTGTTTCACCGACAGCATTGAGATAATTCAAAACAATCCCTCTAAGTCGGTTGCTTCGAATCATAAAAAACAGAACCCTCAAACTGGTGGCAATTCTTCTGGCTCCAAGATGGAGCTCAATCCCGCAATGGCAAGCCCCAGATTTAAGGTTCGAGACCTTGGGAAAGTTTTGCGCCTTGCTTGGGCTCAAGAACGTGGTTACTTTGAGGAGTTTTGCTGTGCTGATATGAAAAATTGCTGTGGACAAGGCAAAATAAACAAGCCCAAAATTCCAGAAAGGCGGTTGCCTTCAGATTCACGGGGCCTTGATTTAAATGTTGTTTCAGTCCCTGATTTGAATGAAGACCTAACACCTCCTTTTGAGTCTTCCAGGGATGAAGGTAATGGTTGCACTTTACTGCAGGCTGTTGAGGCAGATGATGATGCTGTTTCTCATGATCTACAGGAAAACGATAAAGCAAGGTCACATAGGAGTGGCGACTCACAAACCTGGGCTCATGGGCCAAGAGAAGTCTCAGCTGTTGACTCTCGTGTAAATGCAGGCAGGAAAAGGGTTGCGAGCACAAATGAAGAGGCACATGATTGTGATAGTACTTTGATAAGTGGTTCTCCTTTACGTATATCTGGTGGTTCCCGTTTCTTGGATGAAAACTTCGAGTATTGTGTGAAGGTTATCCGTTGGCTAGAGTGCGAGGGCCACATCAAACAGGAATTT 2004 0.4291 SGIQSLSFSVQSTPEKNGHSDDASRSSELFQEFMKYGPKKELLQTCFDKDKKNMSSKNRMTEAKSSGKMIKKQDTKKVSSLNRQPSKKQNRKSENPIRVVPPPNQASDFGHPSTWICKNAACRAVLSVDDTFCRRCSCCICHLFDDNKDPSLWLVCTSESTQGDSCELSCHIECALQHEKVGVVDHGQLMQLDGGYCCASCGKVTGILGFATLMSLLKRNSIMTLFTSLATICNVCWKKQLNIAKDARRVDVLCYRIYLSYRLLNGTSKFKDLHLMVHEAKAKLETEVGPLDGVSAKMARGIVSRLPIASDVQRLCTLAIEKADSWLAIVPNLNSEGSLPAACKFVFEEVTASSVKIILIEMSNICSEDIKGYKLWYYKSWDEPPTKDPVSVFPKSQRRILISDLQPCTEYTFRIISYTAMGDLGHSEAKCFTDSIEIIQNNPSKSVASNHKKQNPQTGGNSSGSKMELNPAMASPRFKVRDLGKVLRLAWAQERGYFEEFCCADMKNCCGQGKINKPKIPERRLPSDSRGLDLNVVSVPDLNEDLTPPFESSRDEGNGCTLLQAVEADDDAVSHDLQENDKARSHRSGDSQTWAHGPREVSAVDSRVNAGRKRVASTNEEAHDCDSTLISGSPLRISGGSRFLDENFEYCVKVIRWLECEGHIKQEF 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2806g00001 668 MobiDBLite consensus disorder prediction 443 469 - -
Trme2806g00001 668 MobiDBLite consensus disorder prediction 1 17 - -
Trme2806g00001 668 CDD FN3 344 423 IPR003961 GO:0005515
Trme2806g00001 668 PANTHER VIN3-LIKE PROTEIN 2-RELATED 236 668 IPR044514 GO:0010048|GO:0040029
Trme2806g00001 668 MobiDBLite consensus disorder prediction 47 106 - -
Trme2806g00001 668 MobiDBLite consensus disorder prediction 575 589 - -
Trme2806g00001 668 Pfam Fibronectin type III domain 345 425 IPR003961 GO:0005515
Trme2806g00001 668 SUPERFAMILY Fibronectin type III 345 423 IPR036116 GO:0005515
Trme2806g00001 668 MobiDBLite consensus disorder prediction 47 78 - -
Trme2806g00001 668 MobiDBLite consensus disorder prediction 1 31 - -
Trme2806g00001 668 Gene3D Immunoglobulins 340 436 IPR013783 -
Trme2806g00001 668 ProSiteProfiles Fibronectin type-III domain profile. 339 438 IPR003961 GO:0005515
Trme2806g00001 668 Pfam PHD - plant homeodomain finger protein 117 212 IPR032881 -
Trme2806g00001 668 MobiDBLite consensus disorder prediction 575 605 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme2806g00001 Trme-Chr2806 148 2549 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2806g00001 75 668 PHD Gene Family AT3G24440 44.298 1.49e-148 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme2806g00001 - - tpra:123915437 1261.51