Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme28059g00001 ATGTATGTTTCACAGCTTCGAAATTGGTTGAAAGGTTGGCATGAGCAATTTTCTAACACTGGTGGCAATAATGACCCTAATTCCAAAAAGGCTGTCTTGTTAAGCGGAACCCCTGGTATAGGCAAAACAACTTCAGCAAAGCTGGTGTGTCAGGAGCTTGGTTTCCAAGCCAGAGAGGTAAATGCTAGTGATAGCCGTGGAAAAGCTGATAGCAAAATTGAAAAGGGAATTAGTGGAAGCAATGCAAATTCTATCAAGGAACTTGTGACCAATGAGTCCTTTGGTCCTAATATGGATAGGTCAAAGCAGTCCAAAACTGTTCTTATTATGGATGAGGTTGACGGGATGTCAGCTGGTGATAGGGGTGGTGTTGCTGATCTTATTGCTAGCATCAAGATATCAAAAATTCCTATMATCTGCATTTGTAATGACCGTTATAGCCAGAAACTAAAAAGCCTAGTGAACYACTGTTTGCTTCTTAGTTACCGGAAGCCTACAAAGCAACAG 507 0.4122 MYVSQLRNWLKGWHEQFSNTGGNNDPNSKKAVLLSGTPGIGKTTSAKLVCQELGFQAREVNASDSRGKADSKIEKGISGSNANSIKELVTNESFGPNMDRSKQSKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNXCLLLSYRKPTKQQ 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme28059g00001 169 CDD AAA 27 128 - -
Trme28059g00001 169 MobiDBLite consensus disorder prediction 15 31 - -
Trme28059g00001 169 MobiDBLite consensus disorder prediction 15 36 - -
Trme28059g00001 169 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 3 169 - -
Trme28059g00001 169 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 167 IPR027417 -
Trme28059g00001 169 SMART AAA_5 28 166 IPR003593 GO:0016887
Trme28059g00001 169 FunFam Replication factor C subunit 1 1 164 - -
Trme28059g00001 169 Pfam ATPase family associated with various cellular activities (AAA) 32 143 IPR003959 GO:0005524|GO:0016887
Trme28059g00001 169 Gene3D - 2 164 IPR027417 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme28059g00001 3 169 Core DNA Replication Machinery Family AT5G22010 79.191 8.81e-73 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme28059g00001 K10754 - gmx:100802809 265.003