Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme280582g00001 GTGTTCTTGACTGAAGAAGGAAAGGGCTGGGGCGTTAGACCACTGGAAGATTTGCCCAAGGGATCCTTTGTATGTGAATACGCTGGGGAAATTTTAACAAATACAGAATTGTATGAAAGGATTGTACAAAGTACCGGCAATGACAGACATACATATCCTGTAACGCTTGATGCAGACTGGGGCTCAGAAGTGGGATTAGAGGATGAAGAGGCATTATGCTTGGATGCAACATATAATGGGAATGTGGCAAGATTCATCAATCATAG 266 0.4286 VFLTEEGKGWGVRPLEDLPKGSFVCEYAGEILTNTELYERIVQSTGNDRHTYPVTLDADWGSEVGLEDEEALCLDATYNGNVARFINH 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme280582g00001 88 SUPERFAMILY SET domain 1 88 IPR046341 -
Trme280582g00001 88 ProSiteProfiles SET domain profile. 1 88 IPR001214 GO:0005515
Trme280582g00001 88 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 88 - -
Trme280582g00001 88 Gene3D SET domain 1 88 IPR046341 -
Trme280582g00001 88 Pfam SET domain 9 88 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme280582g00001 Trme-Chr280582 68 333 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme280582g00001 1 88 C2H2 Transcription Factor Family AT2G23740 44.444 3.75e-16 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trme280582g00001 SET 6.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme280582g00001 - - psat:127094085 176.022