Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme28056g00001 ATGAGGCTGAAGGAGGAATACGATATCGAACCATGGACATTTGAGCAACATGTTGGAGAAGCTGTCATCATTCCTGCTGGATGTCCATACCAGATTAGGAATTCTAAGTGTTGTGTTCATGTGGTATTGGAATTTATGTCTCCTGAGAGTGTTGCCGAGTGTATCCAATTGACTGATGAGATCCATCTGMTTCCCGAAGACCATAAAGCAGAAGTAGACAAGCTAGAGGTGAAGAAAATGGCTCTTCATAGCGTGGAGACGGCAATAAAAGAAATACGCGAGCTCACTTCCAATCCAAAACATGATTGA 309 0.4272 MRLKEEYDIEPWTFEQHVGEAVIIPAGCPYQIRNSKCCVHVVLEFMSPESVAECIQLTDEIHLJPEDHKAEVDKLEVKKMALHSVETAIKEIRELTSNPKHD 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme28056g00001 102 Pfam JmjC domain, hydroxylase 5 44 IPR003347 -
Trme28056g00001 102 SUPERFAMILY Clavaminate synthase-like 2 91 - -
Trme28056g00001 102 Gene3D Cupin 1 71 - -
Trme28056g00001 102 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 2 98 IPR045109 GO:0032454|GO:0033169
Trme28056g00001 102 ProSiteProfiles JmjC domain profile. 1 62 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme28056g00001 Trme-Chr28056 227 934 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trme28056g00001 JmjC 2.2e-07 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme28056g00001 K15601 - gmx:100799234 169.859