Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme28052g00001 ACATGGGTCTCTGCTACTGATCGCAAGCTTTTGGCTCAAATGCAAGGAAACGATTGGAGATCAACAATTAAGCCTAATGTTGTTGTTGCCAAGGATGGTACTGGCCAATTTACAACAATTTGGGATGCTATTACTTCTTACCCAAAGGGAAACAAAGGAAGATATATTATCTACGTCAAGGCTGGTGTCTATGACGAGTACATCAAAGTCCCCAAACATTGCGTTAATTTGACTATTTACGGTGATGGCCCTCAACAGACCGTTGTCACCGGTGATAAGAGCTGTTTCAAGAATGGTATCCAAACCAATTATGGCACCATGCAAACCACAACCTTTGCCAACACCGCAACTGGGTTCATTGCAAAGGCAATGACATTTAGGAACACAGCCGGTGCTGATGGTCATCAAGCTGTTGCTTTCAGAAACCAAGGAGATATGTCTGCTTTCGTTGGTTGCAATTTCATAGGTTACCAAGACACCTTGTACGTTCACGCCAACAGGCAATTCTACCGCAACTGTGTTATCTCTGGTACCATCGATTTCATCTTTGGAATGTCTAACACCTTGATCCAACACTCTACGATCATCGTAAGGAAGCCCTTGGACCGTCAAAATAACACAATTACCGCAGATGGATCAGACGATTCCATTAAGACGAACACTGGTATTGTGATCCAGGACTGCAAGATCGTTGCAGAGACAGCATTGCTCCCTGTAAGGTTCCAAATCCCAACTTACTTGGGCAGGCCATGGAAGATAAATTCAAGGACAGTCTTCATGGAATCCTTCATCGGTGACTTTATTCATTCAGATGGATGGATCCCTTGGAAAGAGAACGGTACTGATATAAATTTTGACACATGTTACTATGCAGAGTATGCAAACACTGGACTTAGTGCCAATCTTTCCGGAAGGATCAAGTGGAAGGGTTATTACGGTAACATTAGCCGGGACGAGGCTACAAAATTCACTGCTGCTATATGGCTCAAGGCTGAAAACACGTCCGCAGCCACCTGGTTGCATGATCTTCATGTTCCTCACTACCTTGGCTTCAAAAGTTTGAAAATTAATTAA 1074 0.4348 TWVSATDRKLLAQMQGNDWRSTIKPNVVVAKDGTGQFTTIWDAITSYPKGNKGRYIIYVKAGVYDEYIKVPKHCVNLTIYGDGPQQTVVTGDKSCFKNGIQTNYGTMQTTTFANTATGFIAKAMTFRNTAGADGHQAVAFRNQGDMSAFVGCNFIGYQDTLYVHANRQFYRNCVISGTIDFIFGMSNTLIQHSTIIVRKPLDRQNNTITADGSDDSIKTNTGIVIQDCKIVAETALLPVRFQIPTYLGRPWKINSRTVFMESFIGDFIHSDGWIPWKENGTDINFDTCYYAEYANTGLSANLSGRIKWKGYYGNISRDEATKFTAAIWLKAENTSAATWLHDLHVPHYLGFKSLKIN 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme28052g00001 357 ProSitePatterns Pectinesterase signature 1. 51 70 IPR018040 -
Trme28052g00001 357 Gene3D - 20 350 IPR012334 -
Trme28052g00001 357 PANTHER PECTINESTERASE 2 340 - -
Trme28052g00001 357 FunFam Pectinesterase 4 23 351 - -
Trme28052g00001 357 ProSitePatterns Pectinesterase signature 2. 175 184 IPR033131 -
Trme28052g00001 357 SUPERFAMILY Pectin lyase-like 21 325 IPR011050 -
Trme28052g00001 357 Pfam Pectinesterase 26 331 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme28052g00001 Trme-Chr28052 1 1158 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme28052g00001 1 351 Carbohydrate Esterase AT2G26450 47.863 3.27e-103 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme28052g00001 K01051 - gmx:100781507 452.981