Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme28044g00001 GCGGACTGGAAGCCACCGTACACGATGGTTATATCGGCAACGGCAACCCATATGGACGCTTCTGTCCATTCAACATTCGCCTCTCGCTATGTCCGCACATCCCTTCCCAGGTTCAAGATGGGGGATCATTCGATCCCGAAGGAAGCCGCGTATCAGATCATAAACGACGAGCTGATGCTAGATGGTAACCCTAGGCTGAATCTTGCATCATTCGTGACCACGTGGATGGAGCCCGAATGCGACAAACTCATCATGGCTTCAATTAACAAAAACTATGTCGACATGGATGAGTACCCTGTCACCACTGAGCTCCAGATTTATTAA 324 0.4969 ADWKPPYTMVISATATHMDASVHSTFASRYVRTSLPRFKMGDHSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMASINKNYVDMDEYPVTTELQIY 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme28044g00001 107 SUPERFAMILY PLP-dependent transferases 21 105 IPR015424 -
Trme28044g00001 107 Pfam Pyridoxal-dependent decarboxylase conserved domain 46 106 IPR002129 GO:0016830|GO:0019752|GO:0030170
Trme28044g00001 107 Gene3D - 9 73 - -
Trme28044g00001 107 FunFam Glutamate decarboxylase 9 73 - -
Trme28044g00001 107 PANTHER GLUTAMATE DECARBOXYLASE 9 105 IPR010107 GO:0004351|GO:0006536|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme28044g00001 Trme-Chr28044 647 1188 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme28044g00001 9 105 Calmodulin-binding Proteins AT5G17330 87.629 2.12e-56 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme28044g00001 K01580 - fve:101297585 181.03