Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme27952g00001 ATCCTTGAGAGGGACCAGATTATGAATAGTTTCTACGAGGTGACAGCTCGATTGGAACAATCACTGGATGGAATTTCCTACGATAAGCTTGACATATCCGATGAAGTTAAAGAGCAGGTTGAACTGGTTCTTACTCAGTTCAGAAGAGCCAAAGGCAGAGTTGATGAACCAGATGCCAAGTTGTATGAAGATATGTCATCCCTTTACAACAATAGCAGTGACACAGCTACAGATCCAGCTATTCTAAGTCGATTAGCAGACAAATTGCAATTGATGGGAATAGCCGATCTTACACAAGAATCACTTGCTTTGCATGAGATGGTGGCAGCAAGTAGTGGAGATCCAGGGGCACGCATCGAGAAGATGTCAATGTTATTGAAGAAGATAAAGGATCATGTGCAAATAGAAAACTTAGTCAAGGATGATACTGCAACAGCAAAAGGCGTTTCTTCAGGATTTTACGGACTCGAGGAAAATGATAAGAATCATCAGGTCCCTGCTATCCCTAGTGATTTTAAATGTCCTATTTCCTTGGAATTGATGATGGATCCTGTCATTGTTTCAACAGGACAGGTATGTGCATTCTATGATACCCTCTGA 600 0.4133 ILERDQIMNSFYEVTARLEQSLDGISYDKLDISDEVKEQVELVLTQFRRAKGRVDEPDAKLYEDMSSLYNNSSDTATDPAILSRLADKLQLMGIADLTQESLALHEMVAASSGDPGARIEKMSMLLKKIKDHVQIENLVKDDTATAKGVSSGFYGLEENDKNHQVPAIPSDFKCPISLELMMDPVIVSTGQVCAFYDTL 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme27952g00001 199 PANTHER U BOX DOMAIN-CONTAINING 2 191 - -
Trme27952g00001 199 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 197 IPR013083 -
Trme27952g00001 199 SUPERFAMILY RING/U-box 157 192 - -
Trme27952g00001 199 Pfam U-box domain 168 192 IPR003613 GO:0004842|GO:0016567
Trme27952g00001 199 ProSiteProfiles U-box domain profile. 167 199 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme27952g00001 Trme-Chr27952 80 794 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme27952g00001 1 191 U-box Gene Family AT3G46510 56.477 2.77e-64 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme27952g00001 - - gmx:100815575 307.375