Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme27931g00001 ATGCATACTGCTCAACTCAATTTTTTTGTTGGATCACATGTTTGGGTTGAGGACCCTGATGTAGCTTGGATAGAGGGAGAAATTCTTGAATCTAAAGATCAAGTGATCACCATTAGCAATGAATCAGGAACAAAGGTTGTTAGCAAATCAGCTAATATCTATCCAAAAGATCCTGAATTTCCA 183 0.3716 MHTAQLNFFVGSHVWVEDPDVAWIEGEILESKDQVITISNESGTKVVSKSANIYPKDPEFP 61
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme27931g00001 61 Gene3D - 12 56 IPR008989 GO:0003774|GO:0005524|GO:0051015
Trme27931g00001 61 Pfam Myosin N-terminal SH3-like domain 11 51 IPR004009 GO:0003774|GO:0005524|GO:0016459
Trme27931g00001 61 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 9 58 IPR004009 GO:0003774|GO:0005524|GO:0016459
Trme27931g00001 61 SUPERFAMILY Myosin S1 fragment, N-terminal domain 7 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme27931g00001 Trme-Chr27931 1 1017 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme27931g00001 10 61 Myosins gene family AT1G04600 65.385 1.17e-17 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme27931g00001 K10357 - mnt:21394610 88.5817