Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme278g00001 GGGGCTCCAGTGAATATCATTGTGGGTTCTCATGTCTGGGTGGCAGACCCAGAGGAAGCTTGGGTTGACGGACAGGTATCAAAAATCAATGAAAAGGATGCTGAAATTGTAACTACCCATGGAAAAAAGGTTGTTGCAAAGTTATCAAAAATATATCCTAAGGATATGGAAGCTCTTCCTGGTGGAGTGGATGATATGACTAAATTGTCCTATTTGCATGAGCCTGGAGTTCTGCAGAACTTAAAAGCTAGATATGAATTGAATAAAATATATACTTATACCGGAAATATCCTGATTGCCATAAATCCATTCCAAAGGCTGCCTCATATTTATGGTACACACATGATGCAACAATACAAGGGAGCGCCACCTGGAGAATTAAGCCCTCATGTATTTGCAGTAGCTGATGTTGCATATAGAGCAATGGTTAATGAAGGGAAAAGCAATTCAATTCTGGTCAGTGGGGAAAGTGGAGCTGGTAAAACTGAAACTACAAAAATGCTTATGCAATTCCTAGCTTTCTTAGGTGGTAGAGCTGCGACTGAAGGAAGAACAGTTGAACAACAAGTTCTTGAATCAAATCCAGTTCTGGAAGCATTTGGCAATGCTAAAACTGCCAGGAATAACAATTCCAGTCGTTTTGGTAAATTTGTTGAGATCCAATTTGACGAGAGTGGAAGAATCTCAGGAGCAGCCATCCGAACATACCTTCTAGAGAGATCTCGGGTCTGTCAAGTTAATGATCCTGAACGAAACTACCACTGCTTTTATCTCCTTTGTGCCGCACCACAGGAGGAAATTGAGAAATACAAATTAGGAAATCCTAAATCATTTCACTACCTTAACCAGTCACAATGCTATGAACTTGCCGATGTAAATGATGCTCATGAGTATCTTGCCACCCGCAGAGCTATGGGTATTGTTGGAATTAGTCAAAAAGATCAGGAAGCCATTTTCAGAGTTGTTGCTGCAATTCTTCATATTGGTAATATTGATTTTGCCAAAGGAAAGGAAATTGACTCGTCAATTCCAAAAGACGACAAAGCCAAATTCCACCTGAAAACAGCTGCTGAGCTTCTGATGTGTGATGCTGATGCCTTGGAAGATGCATTATGTAAGCGTGTCATGATCACTCCTGAAGAAGTTATAAAACGGAGCCTCGACCCAGGATGTGCAACAGTCAGTAGAGATGGACTGGCAAAGACAATTTATTCTCGGCTGTTTGATTGGCTGGTAGACAAGATTAATAATTCAATTGGACAAGACCCCAATTCTAAATTTTTGATTGGGGTCCTTGATATCTATGGTTTTGAAAGCTTTAAATTGAACAGTTTGTCATGCTCTGCAGTTTTGAGCAGTTCTGCATTAACTTCACAAATGAAAAGTTGCAGCAACATTTCAATCAGGCAAAATTTCGTGGAACAAGAAGAATACACAAAGGAGCAGATCAATTGGAGCTACATTGAATTTGTGGACAACCAAGATGTTTTGGACCTTATTGAAAAGAAACCAGGAGGAATCATTGCTCTCCTCGATGAAGCTTGGTAA 1548 0.4012 GAPVNIIVGSHVWVADPEEAWVDGQVSKINEKDAEIVTTHGKKVVAKLSKIYPKDMEALPGGVDDMTKLSYLHEPGVLQNLKARYELNKIYTYTGNILIAINPFQRLPHIYGTHMMQQYKGAPPGELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMQFLAFLGGRAATEGRTVEQQVLESNPVLEAFGNAKTARNNNSSRFGKFVEIQFDESGRISGAAIRTYLLERSRVCQVNDPERNYHCFYLLCAAPQEEIEKYKLGNPKSFHYLNQSQCYELADVNDAHEYLATRRAMGIVGISQKDQEAIFRVVAAILHIGNIDFAKGKEIDSSIPKDDKAKFHLKTAAELLMCDADALEDALCKRVMITPEEVIKRSLDPGCATVSRDGLAKTIYSRLFDWLVDKINNSIGQDPNSKFLIGVLDIYGFESFKLNSLSCSAVLSSSALTSQMKSCSNISIRQNFVEQEEYTKEQINWSYIEFVDNQDVLDLIEKKPGGIIALLDEAW 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme278g00001 515 ProSiteProfiles Myosin motor domain profile. 61 515 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trme278g00001 515 PANTHER MYOSIN 53 514 - -
Trme278g00001 515 Pfam Myosin head (motor domain) 63 514 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trme278g00001 515 Gene3D Kinesin motor domain 11 295 IPR036961 -
Trme278g00001 515 PRINTS Myosin heavy chain signature 195 222 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trme278g00001 515 PRINTS Myosin heavy chain signature 428 456 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trme278g00001 515 PRINTS Myosin heavy chain signature 486 514 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trme278g00001 515 PRINTS Myosin heavy chain signature 91 110 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trme278g00001 515 PRINTS Myosin heavy chain signature 148 173 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trme278g00001 515 SMART MYSc_2a 56 515 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trme278g00001 515 Gene3D - 464 515 - -
Trme278g00001 515 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 7 56 IPR004009 GO:0003774|GO:0005524|GO:0016459
Trme278g00001 515 Pfam Myosin N-terminal SH3-like domain 8 50 IPR004009 GO:0003774|GO:0005524|GO:0016459
Trme278g00001 515 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 514 IPR027417 -
Trme278g00001 515 FunFam Myosin 2 311 425 - -
Trme278g00001 515 Gene3D Myosin VI head, motor domain, U50 subdomain 311 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme278g00001 Trme-Chr278 627 4758 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme278g00001 1 514 Myosins gene family AT1G08730 81.154 0.0 884
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme278g00001 K10357 - gmx:100816792 886.715