Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme27885g00001 AAGAAAGGTGTGTCTGGGTTTAGGAAGGCGTTTCAACGGAAGGTGTCGGACAAGAAACGGCCGTGGGTGGTGCCGGTGTTGAATTTTGTTGGGAGGAAGGAGGTTCCGGCGAGTGAGGGGAGGGAGAAGCTGGTGGAGGTGAAGAGTGAGAGCAATGTGCAGTGGGCGTTAGGGAAGGCCGGGGAGGATCGGGTTCATGTGGTGGTTTCNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNCCCGATGCGCCGGAGTTTTTGATGGGTAATATGTACCGTGCTGTTTATAATGAGCTTCAGGGTTTGTTCTGGGAAGTTGAAGAAACAATGGAGAGTAATCCTGTTGAGGTGAAAGACAAAACGGAGGGAGAAAATTCCGGTGCTGGTTTGGTGAATGTGGTTCGCGAGACTGAAACTGGAACGGTGAGTAAACGGCGTAGGTTGTGGGAGTTCCTGGCGGAAGACCCTGAAGATGGACTTGATCTTTCTGGGTCTGATAGGTTTGCGTTTTCTGTTGANNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNCTGTCTAAACTGAAGAATGGGTTGTCAAAGCATAGGGAGGGTAATGGTAGGAAGTTGTTGCCGTGGAATTTGGGGAATGAGGAAGAGAAAGAAGAAAAGTCTGAGGTGGAAAACAAACCTTCTGCTTCTGGTACTGGCAGTGGTGGTGGGAAGAGACGGAAATTGGGTCCGGTCGATCATGATTTGGTTTTGAATGCAATGTCTCGGGCGCTTCAAGTAACAGAGCTTGCATATTTGGATATGACGGATAAGCGTCTGGATACAAATCCTGAACTTGCTTTGATGGGTTCTTGTCTGTTGGTTGTTTTGATGAGGGATGACSATGTGTATGTTATGAATGTTGGGGATAGTCGTGCAATTGTTGCGCATTATGAGCCCAAGGMGGGTCAGGATACTTCCAACATGGAACCTGCAAGCAAGGAACAACATGTTGGTGTTGGTTCCAGCAGTGGGAGCATAGTTGAGGAGTTATTAGCGTTAGATGGTACTCAAACTGAAGGTGCAATGAAGGTAGGGAATCAGGGTCCTGCTCAAGAAATGAGGTTGGCGGCATTGCAGCTATCTACTGACCACAGCACCAGCATTGAAGAA 1188 0.4394 KKGVSGFRKAFQRKVSDKKRPWVVPVLNFVGRKEVPASEGREKLVEVKSESNVQWALGKAGEDRVHVVVSXXXXXXXXXXXXXXXXPDAPEFLMGNMYRAVYNELQGLFWEVEETMESNPVEVKDKTEGENSGAGLVNVVRETETGTVSKRRRLWEFLAEDPEDGLDLSGSDRFAFSVXXXXXXXXXXXXXXXXXXXXXLSKLKNGLSKHREGNGRKLLPWNLGNEEEKEEKSEVENKPSASGTGSGGGKRRKLGPVDHDLVLNAMSRALQVTELAYLDMTDKRLDTNPELALMGSCLLVVLMRDDXVYVMNVGDSRAIVAHYEPKXGQDTSNMEPASKEQHVGVGSSSGSIVEELLALDGTQTEGAMKVGNQGPAQEMRLAALQLSTDHSTSIEE 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme27885g00001 396 ProSiteProfiles PPM-type phosphatase domain profile. 46 396 IPR001932 -
Trme27885g00001 396 MobiDBLite consensus disorder prediction 205 255 - -
Trme27885g00001 396 Gene3D - 196 396 IPR036457 -
Trme27885g00001 396 Coils Coil 178 178 - -
Trme27885g00001 396 SUPERFAMILY PP2C-like 257 392 IPR036457 -
Trme27885g00001 396 MobiDBLite consensus disorder prediction 205 237 - -
Trme27885g00001 396 PANTHER PROTEIN PHOSPHATASE 2C 43 395 IPR015655 GO:0004722|GO:0006470
Trme27885g00001 396 Pfam Protein phosphatase 2C 269 322 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme27885g00001 Trme-Chr27885 22 1209 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme27885g00001 18 396 PP2C-type Phosphatase Gene Family AT2G35350 44.554 3.33e-86 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme27885g00001 - - mtr:11415473 535.028