Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme278835g00001 AAGACTGGCAACATTCTCTTAGATGATGATCTTCAGCCTAAAATTGCTGATTTTGGGTTGGCAAGGCTTTTACCAGAAGATCAATCTCATCTTAGCACAAGATTTGCAGGAACATTGGGATACACTGCACCAGAATATGCAATACATGGTCAGTTATCAGTGAAGGCTGATGCCTACAGTTTCGGTGTTGTAGTCCTAGAAATCATAAGCGGCCAAAAGAGCAGTGAGTTGAGGGAAGATGCTGATGGTGAATTCCTTCTTCAAAGGGTAAG 272 0.4228 KTGNILLDDDLQPKIADFGLARLLPEDQSHLSTRFAGTLGYTAPEYAIHGQLSVKADAYSFGVVVLEIISGQKSSELREDADGEFLLQRV 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme278835g00001 90 Pfam Protein kinase domain 1 76 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme278835g00001 90 Gene3D Transferase(Phosphotransferase) domain 1 1 90 - -
Trme278835g00001 90 SUPERFAMILY Protein kinase-like (PK-like) 1 73 IPR011009 -
Trme278835g00001 90 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 1 89 - -
Trme278835g00001 90 ProSiteProfiles Protein kinase domain profile. 1 90 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme278835g00001 Trme-Chr278835 2 360 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme278835g00001 1 83 Receptor kinase-like Gene Family AT4G23230 63.095 1.52e-29 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trme278835g00001 Pkinase 2.7e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme278835g00001 - - gmx:100811953 166.007