Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme27878g00001 ATGGTGATGGGACCTGCTTTATACACTTTACATAGAAAAGTTTATGGCAATGGCGATGGATCTAAACTTGAAGAAAACACACTGAATGCTTATGTACTATGGACTTTAGTTCTAACTGTGACAGGTTTTCCGGTTGTAGTTCACTCTCTTTCTGAGCTCAAACTTCTTTATACTGGTCTTGGTAAGGCTGCATTAACAGCAGCTATGATCGGTGACACATATGCTTGGATTTTATTCACATTATTTGTTCCATTTTCGATTAATGGTACAAGGGGAACATACTCGGTATTAGGCACCATAATATTTGCTTTTATTTGCATCTATGTGGTGCGTCCTATCATTGTAAAGGTCATTGATCGCAAGACTGAAAGAGATCAATGGGATGATAACCAACTACTCTTTGTGGTGATGGGAATTTTCATTTGTGCACACACAACGGATGCTCTTGGCACACATGGTGTTGTTGGGGCTTTTGTGTATGGATTGATTTTACCCCATGGTAAATTTGCTGACATGGTGATGTCAATGACTGATGATTTTGGTGGCACGTTTCTAGCGCCGCTCTTCTTTAGTGGCACCGGAATGCGACTAATGGTGGCTACCATTTTCGACCACCCAAATTGGCCTTTTACACTTATG 639 0.4069 MVMGPALYTLHRKVYGNGDGSKLEENTLNAYVLWTLVLTVTGFPVVVHSLSELKLLYTGLGKAALTAAMIGDTYAWILFTLFVPFSINGTRGTYSVLGTIIFAFICIYVVRPIIVKVIDRKTERDQWDDNQLLFVVMGIFICAHTTDALGTHGVVGAFVYGLILPHGKFADMVMSMTDDFGGTFLAPLFFSGTGMRLMVATIFDHPNWPFTLM 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme27878g00001 213 PANTHER CATION/H + ANTIPORTER 28 202 - -
Trme27878g00001 213 Pfam Sodium/hydrogen exchanger family 28 210 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Trme27878g00001 213 Gene3D - 11 213 IPR038770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme27878g00001 Trme-Chr27878 58 696 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme27878g00001 8 208 Antiporter Super Family AT2G13620 31.707 3.81e-29 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme27878g00001 - - gmx:100818017 310.842