Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme278751g00001 ATGTATCAGAAGACAATCCCCATGGCTACTGCCGCCGCCGCCACAACGCGGTGGCCGACTCAGCCAACTCAGTGGACTCGTGAAGATGACAAGCTTTTCGAGCGAGCTCTTTTGATGGTGCCGGAAGATTTACCTAACCGGTGGGAGAAGATCGCCGAACAAGTTCCCGGTAAGTCTGTGGCGGAAGTTAGGGATCACTATGAGGATTTGGTACATGATGTTTTGGAAATTGAATTGGGTCGGGTTGAGGTTCCGAGCTATCCTGATGACTTGGCGGCGGTGAGTGGTG 289 0.5294 MYQKTIPMATAAAATTRWPTQPTQWTREDDKLFERALLMVPEDLPNRWEKIAEQVPGKSVAEVRDHYEDLVHDVLEIELGRVEVPSYPDDLAAVSG 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme278751g00001 96 ProSiteProfiles Myb-like domain profile. 25 71 IPR001005 -
Trme278751g00001 96 SUPERFAMILY Homeodomain-like 23 77 IPR009057 -
Trme278751g00001 96 FunFam Transcription factor SRM1 19 84 - -
Trme278751g00001 96 Pfam Myb-like DNA-binding domain 24 69 IPR001005 -
Trme278751g00001 96 Gene3D - 20 84 - -
Trme278751g00001 96 SMART sant 21 73 IPR001005 -
Trme278751g00001 96 ProSiteProfiles SANT domain profile. 20 67 IPR017884 -
Trme278751g00001 96 CDD SANT 25 71 IPR001005 -
Trme278751g00001 96 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 17 88 IPR044636 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme278751g00001 Trme-Chr278751 72 360 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trme278751g00001 Myb_DNA-binding 1.5e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme278751g00001 - - gmx:547481 134.035