Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme27874g00001 GACGTTAGAACCCTTGGATTATGGGGCATGGGTGGCACAGGAAAGACCACTCTAGCTAAAGAGTTATATGTTAACCTGTGTGCTCAATTTGATCATCATTGCTTCCTCGAAAATGTAAGGGGAGAATCAATCAGGCATGGACTCAATGTTGAAAAACATGCTAAAGTTGGATATGAAGAGCTCTTAGAAAGTACAATTGGGTATTGTGGAGGCAATCCTCTAGCTTTAAAAGTCTTAGGTGCGAATTTCCGTACAAAAAGCAAAGAAGTGTGGGAAAGTGAATTGGAGAAGCTCAAAAAGATTCCTAATAGGAGAATTCACGATGTGTTAAAAGTGAGTTTCGATGACTTAGATCGTTCTCAACAGGACATATTTCTAGACATTGCATGCTTCTTCAACCCAAGATTAATTAATCGATTTCGATCTTAG 429 0.3893 DVRTLGLWGMGGTGKTTLAKELYVNLCAQFDHHCFLENVRGESIRHGLNVEKHAKVGYEELLESTIGYCGGNPLALKVLGANFRTKSKEVWESELEKLKKIPNRRIHDVLKVSFDDLDRSQQDIFLDIACFFNPRLINRFRS 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme27874g00001 142 Pfam NB-ARC domain 55 102 IPR002182 GO:0043531
Trme27874g00001 142 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 128 IPR027417 -
Trme27874g00001 142 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 55 133 IPR044974 GO:0006952
Trme27874g00001 142 Gene3D - 44 118 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme27874g00001 Trme-Chr27874 311 1039 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme27874g00001 1 38 WRKY Transcription Factor Family AT5G45050 52.632 4.75e-10 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme27874g00001 - - vvo:131628915 128.642