Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme27818g00001 TATTTCTATGAATGCGTGATTTGCGATCTTGGTGGCAACTTATTGTGCTGTGATAGCTGTCCTCGCACTTATCATTTACAGTGTCTTGACCCTCCTCTTAAGCGTATCCCTATGGGGAAGTGGCAATGTCCAAGGTCAAGCAAAGCAAAATCTGTTTCAACTATGGGAGGCAAATTCTTTGGAGTGAAACCATTGTCTTCTCCAGTGGATGCAACTTGTAGCAACAAGCCAATGGACCCATCTCTTGAGAGTTGCAAGGAAGGAACTTCATCATGTGTGGATGCTGTTGACAAGAACTTGAACTTGTCCCCAACAGCCTCGCCTATGGACACGGTGTCAGCTTCACCTGATAAGGAAGTTTTATCTCCCTCTAAAATTACTANNNNNNNNNNANNNNNNNNNNANNTGGAGGAGAAGCCTGATTTATCTTGTGATAAAATTCCCTTTAGAAAAACACTTGTTCTTGGTATTACTGCTGGTGGAGAGGAAATGAGGAAAAGGAAGCTTAAAGTTATTAATGATAATGCTAATCAAAAGAAGCGTAGGACTGAAAAGGGGAATTTTTTTGTCATTACTCCTATAAAGTCAAAGTCTGGAAATAATAAAGTAAACAAGAAGCAAAAGTCCAAAACGCACAAAATTTCCACATCTATATCAAAAGGGGATGTCGGGAAAAAGAAATCTGATGCCCAGCGGAAAGATAAGGTACTTGTTCTGCCTCTAATTTCTTATAAGATGTTTACTTCTAGGAACCTATAA 759 0.3847 YFYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPMGKWQCPRSSKAKSVSTMGGKFFGVKPLSSPVDATCSNKPMDPSLESCKEGTSSCVDAVDKNLNLSPTASPMDTVSASPDKEVLSPSKITXXXXXXXXXEEKPDLSCDKIPFRKTLVLGITAGGEEMRKRKLKVINDNANQKKRRTEKGNFFVITPIKSKSGNNKVNKKQKSKTHKISTSISKGDVGKKKSDAQRKDKVLVLPLISYKMFTSRNL 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme27818g00001 252 MobiDBLite consensus disorder prediction 199 227 - -
Trme27818g00001 252 Pfam PHD-finger 5 45 IPR019787 -
Trme27818g00001 252 SUPERFAMILY FYVE/PHD zinc finger 3 46 IPR011011 -
Trme27818g00001 252 PANTHER PHD FINGER PROTEIN 3 150 - -
Trme27818g00001 252 SMART PHD_3 4 47 IPR001965 -
Trme27818g00001 252 CDD PHD2_CHD_II 5 45 - -
Trme27818g00001 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 48 IPR013083 -
Trme27818g00001 252 ProSiteProfiles Zinc finger PHD-type profile. 2 49 IPR019787 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme27818g00001 5 59 PHD Transcription Factor Family AT2G36720 47.273 1.33e-10 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trme27818g00001 PHD 2.2e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme27818g00001 - - gmx:100793933 257.684