Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme27790g00001 ATTTGTGATTTCGGGCTAGCAAAATGGCTGCCAGAGAATTGGACTCATCACAATGTTTCAAAATTTGAAGGAACTTTTGGCTACCTTGCTCCTGAATACTTGCTTCATGGCATAGTAGATGAGAAAACAGATGTATTTGCCTTTGGTGTATTGCTATTAGAATTAGTCAGTGGGAGAAGAGCACTTGATTATTCACAACAAAGCCTTGTTTTGTGGGCAAAACCTTTGTTGAAAAAGAATGATATTATGGAGCTGATAGATCCGTCGCTAGCCAGGGATTTCGACATTAGGCAGATGAATCTTATGCTCTTGACAGCTTCTTTATGCATACAACAGTCCTCCATTCGCCGCCCCTCTATGAGACAGGTTGTGCAGCTTCTGAATGGAAACCTTAGTTGCTTCAAGGCCATGAAGAAAACTCGATTGCCAGTCTTCCGAAGAGTCTTTCGGGAAGAGCTCCTTGATGATGATTCTGATTAG 480 0.4188 ICDFGLAKWLPENWTHHNVSKFEGTFGYLAPEYLLHGIVDEKTDVFAFGVLLLELVSGRRALDYSQQSLVLWAKPLLKKNDIMELIDPSLARDFDIRQMNLMLLTASLCIQQSSIRRPSMRQVVQLLNGNLSCFKAMKKTRLPVFRRVFREELLDDDSD 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme27790g00001 159 SUPERFAMILY Protein kinase-like (PK-like) 1 133 IPR011009 -
Trme27790g00001 159 ProSiteProfiles Protein kinase domain profile. 1 131 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme27790g00001 159 PANTHER OS08G0249100 PROTEIN 1 155 IPR046958 -
Trme27790g00001 159 Gene3D Transferase(Phosphotransferase) domain 1 1 143 - -
Trme27790g00001 159 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 1 141 - -
Trme27790g00001 159 Pfam Protein kinase domain 1 125 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme27790g00001 Trme-Chr27790 217 1142 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme27790g00001 1 128 Trihelix Transcription Factor Family AT5G38560 43.066 7.19e-31 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Trme27790g00001 Pkinase 5.6e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme27790g00001 - - gmx:100802873 299.671