Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme27770g00001 GGAGAACCTCTTTGTGTCTTCTATTCGCGGTATGGCATATGCAAATTTGGCCCAAGCTGCAAGTTTGATCACCCAATGGGCATCTTCACCTATAATGTACCCGCATCACCATTAGCCGATGCCTCAGGACGTCGTCTGTTAGGTTCTTCATCAGGAACTGCTGCATTAAGTTTATCATCAGAAGGACTTGTTGAGTCAAGCTCAGCAAAGCCAAGGAGGCTTTCACTATCAGAGACTAGACCGATTCCTACTGGTGATGATAACATTGATGATGAGGGATAA 282 0.4539 GEPLCVFYSRYGICKFGPSCKFDHPMGIFTYNVPASPLADASGRRLLGSSSGTAALSLSSEGLVESSSAKPRRLSLSETRPIPTGDDNIDDEG 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme27770g00001 93 Gene3D - 1 69 - -
Trme27770g00001 93 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 2 26 IPR000571 GO:0046872
Trme27770g00001 93 ProSiteProfiles Zinc finger C3H1-type profile. 1 27 IPR000571 GO:0046872
Trme27770g00001 93 MobiDBLite consensus disorder prediction 60 93 - -
Trme27770g00001 93 SUPERFAMILY CCCH zinc finger 4 26 IPR036855 GO:0046872
Trme27770g00001 93 SMART c3hfinal6 1 26 IPR000571 GO:0046872
Trme27770g00001 93 MobiDBLite consensus disorder prediction 60 74 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme27770g00001 1 91 C2H2 Transcription Factor Family AT3G02830 48.421 6.03e-21 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trme27770g00001 zf-CCCH 1.2e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme27770g00001 - - gmx:100785411 144.436