Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme27702g00001 GACCTTTTGAGAGCTTCTGCCGAGATTCTTGGAAAGGGTACATTTGGAACAACATATAAGGCAGCCTTGGAGGACGCAACTACTGTGGCGGTGAAGAGGTTGAAAGAGGTTACTGTCGGGAAAAGGGAGTTCGAACAGCAGATGGAAGTGGTTGGGAAAATTAAGCATGAAAATGTGGATACATTAAGAGCTTACTATTATTCAAAGGATGAGAAACTAGTAGTATCTGATTATTATCAACAAGGAAGTGTTTCTTCCATCTTACATGTGTCTCACAAGTCAACTATATTTGGATAA 297 0.4007 DLLRASAEILGKGTFGTTYKAALEDATTVAVKRLKEVTVGKREFEQQMEVVGKIKHENVDTLRAYYYSKDEKLVVSDYYQQGSVSSILHVSHKSTIFG 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme27702g00001 98 SUPERFAMILY Protein kinase-like (PK-like) 8 91 IPR011009 -
Trme27702g00001 98 Gene3D Phosphorylase Kinase; domain 1 5 78 - -
Trme27702g00001 98 PANTHER OS05G0588300 PROTEIN 1 89 - -
Trme27702g00001 98 FunFam pollen receptor-like kinase 1 1 78 - -
Trme27702g00001 98 ProSitePatterns Protein kinases ATP-binding region signature. 10 41 IPR017441 GO:0005524
Trme27702g00001 98 Pfam Protein tyrosine and serine/threonine kinase 8 92 IPR001245 GO:0004672|GO:0006468
Trme27702g00001 98 ProSiteProfiles Protein kinase domain profile. 4 98 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme27702g00001 Trme-Chr27702 56 549 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme27702g00001 1 89 Receptor kinase-like Gene Family AT4G23740 77.528 1.02e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trme27702g00001 PK_Tyr_Ser-Thr 2.7e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme27702g00001 - - mtr:25489776 164.851