Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme27664g00001 ATGTTTTCTCAACGAGATCCAAGTGTTCGGAAGAGTGGATCTGGCAATGTGTTCATCAAGAACTTGGACACATCAATTGATCACAAGGCATTACATGACACTTTTGCCGCCTTTGGCACTGTGCTGTCTTGTAAGGTGGCTCTTGACAGTAGTGGTCAGTCAAAAGGGTATGGTTTTGTACAGTATGAACACGAAGAAGCTGCAAAGAGTGCCATCAAACAGTTGAATGGCATGTTGATCAATGATAAACAAGTCTATGTTGGATTTTTTGTTCGCCACCAGGAAAGGGTTAGGACAAATGGATCACCCAAGTTCACTAATGTGTTTGTGAAAAATCTTTCTGAAACACTAAATGATGAAGACTTGAAGCAGTTATTTGGCCCCTTTGGTGCGATAACTAGTGCAACAATCATGAAAGANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNGGGACCATCAATGATGCCAAGGTTTTATTTGTGGGGAGAGCTCAGAGGAAAGCAGAAAGGGAGCATGAGTTGAAAACTAAATTTGAGCAGGAAAAAATTAGTAGATATGAGAAACTTCAAGGGGCTAATTTGTACTTGAAAAATCTTGATGATGATTTTACTGATGAAAAGTTAAAGGATTTGTTTTCTGAGTTTGGAACCATAACATCTTGCAGGGTGATGTTGGATTCCCATGGTCATAGTAAGGGTTCTGGTTTTGTGGCATTTTCTACTCCTGAGGAAGCAAATAAAGCGTTGAATGAAATGAATGGGAAGTTAGTTGGACGAAAGCCTCTGTTTGTTGCTGTGGCTCAGCGCAAAGAAGAGAGGAAGGCCCAATTGCAGGTGATGCTCTTCTTTAATATCATTGTTCATATATGA 921 0.3659 MFSQRDPSVRKSGSGNVFIKNLDTSIDHKALHDTFAAFGTVLSCKVALDSSGQSKGYGFVQYEHEEAAKSAIKQLNGMLINDKQVYVGFFVRHQERVRTNGSPKFTNVFVKNLSETLNDEDLKQLFGPFGAITSATIMKXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTINDAKVLFVGRAQRKAEREHELKTKFEQEKISRYEKLQGANLYLKNLDDDFTDEKLKDLFSEFGTITSCRVMLDSHGHSKGSGFVAFSTPEEANKALNEMNGKLVGRKPLFVAVAQRKEERKAQLQVMLFFNIIVHI 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme27664g00001 306 SMART rrm1_1 210 282 IPR000504 GO:0003723
Trme27664g00001 306 SMART rrm1_1 107 203 IPR000504 GO:0003723
Trme27664g00001 306 SMART rrm1_1 16 88 IPR000504 GO:0003723
Trme27664g00001 306 SUPERFAMILY RNA-binding domain, RBD 15 140 IPR035979 GO:0003676
Trme27664g00001 306 Coils Coil 138 139 - -
Trme27664g00001 306 SMART rrm2_1 210 282 IPR003954 GO:0003676
Trme27664g00001 306 SMART rrm2_1 16 88 IPR003954 GO:0003676
Trme27664g00001 306 PANTHER RNA BINDING PROTEIN 14 140 - -
Trme27664g00001 306 FunFam Polyadenylate-binding protein 16 89 - -
Trme27664g00001 306 FunFam Polyadenylate-binding protein 192 297 - -
Trme27664g00001 306 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 92 IPR000504 GO:0003723
Trme27664g00001 306 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 286 IPR000504 GO:0003723
Trme27664g00001 306 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 85 IPR000504 GO:0003723
Trme27664g00001 306 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 139 IPR000504 GO:0003723
Trme27664g00001 306 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 278 IPR000504 GO:0003723
Trme27664g00001 306 SUPERFAMILY RNA-binding domain, RBD 203 293 IPR035979 GO:0003676
Trme27664g00001 306 Gene3D - 103 146 IPR012677 -
Trme27664g00001 306 CDD RRM2_I_PABPs 13 88 IPR045305 -
Trme27664g00001 306 Gene3D - 172 295 IPR012677 -
Trme27664g00001 306 CDD RRM4_I_PABPs 208 286 - -
Trme27664g00001 306 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Trme27664g00001 306 Gene3D - 14 102 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme27664g00001 Trme-Chr27664 12 1192 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme27664g00001 1 297 Eukaryotic Initiation Factors Gene Family AT1G71770 58.194 1.18e-121 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme27664g00001 K13126 - gmx:100783163 445.277