Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme276508g00001 TTCTCAGGAGCCACGTCGAGGCCTTCTGTGAGATCGATTGTTGGTGAATCGGAGCTTTCTGATGTTGAGGCTTCTTGCAGGGAGGATAAACCGAGTCCCTCTGATGACAGGAGGCCGAGGAAGAGGGGCAGAAAGCCAGCAAATGGAAGAGAAGAACCGCTCAATCATGTGGAGGCAGAGAGGCAAAGACGCGAGAAGCTAAACCAACGTTTTTACGCCTTACGAGCTGTTGTGCCGAATATTTCCAAGATGGACAAAGCATCTTTGTTGGGAGATGCTATTTCTTACATCAACGAGCTTCAAGCAAAACTCAAGATGATGGAATCCGAGAGAGAGCAATTCGGAAGCACTTCTAAAGATG 361 0.482 FSGATSRPSVRSIVGESELSDVEASCREDKPSPSDDRRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAISYINELQAKLKMMESEREQFGSTSKD 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme276508g00001 120 Coils Coil 97 117 - -
Trme276508g00001 120 CDD bHLH_AtAIB_like 48 113 - -
Trme276508g00001 120 Gene3D - 40 116 IPR036638 GO:0046983
Trme276508g00001 120 MobiDBLite consensus disorder prediction 21 62 - -
Trme276508g00001 120 FunFam Transcription factor bHLH13 44 118 - -
Trme276508g00001 120 SMART finulus 57 106 IPR011598 GO:0046983
Trme276508g00001 120 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 51 100 IPR011598 GO:0046983
Trme276508g00001 120 Pfam Helix-loop-helix DNA-binding domain 55 101 IPR011598 GO:0046983
Trme276508g00001 120 MobiDBLite consensus disorder prediction 1 62 - -
Trme276508g00001 120 PANTHER MYC 17 112 IPR045084 GO:0003700|GO:0006355
Trme276508g00001 120 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 50 114 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme276508g00001 Trme-Chr276508 1 361 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme276508g00001 10 114 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G46760 70.755 1.35e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trme276508g00001 HLH 4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme276508g00001 - - dzi:111304846 191.815