Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme27622g00001 ATGAATGTGATGACAGAACCTGATCCTGATGATCTTGTGGCTCCCACACCAGAATTATCTACATTGCAGACATATGAGCCAGATCCTGATGACGAAGAACTCCAGAGGATAAACGGTGCCATGACCGCTGTTTGTAACCGATTGCAGAAGGCCTTGGAGATGCTGAAAAGTGAAGTTGGTCCAATGCAAAGTACTTCAATTCTCCAAACTCTCTTGAAAATAATTAGGAACGTGATTGAACATCCCGAGATGGAAAAATACAAGAGATTGCGGAAGACTAATCCTGTCATTGAGAGGAATATCCTAAATAATAAAGCTGCATTGGAAATTCTCTCGTTGGTTGGTTTTAGAGAAGATGTTATATATGACAATCTTGGGAAGGAAGATGCATACTTGGTGCTGAAGCGGAATGATCCTGGCTTATTGTGGCTAGCTAAGTCAACCCTCGAGTCAAGCAGAGCTTGA 465 0.4215 MNVMTEPDPDDLVAPTPELSTLQTYEPDPDDEELQRINGAMTAVCNRLQKALEMLKSEVGPMQSTSILQTLLKIIRNVIEHPEMEKYKRLRKTNPVIERNILNNKAALEILSLVGFREDVIYDNLGKEDAYLVLKRNDPGLLWLAKSTLESSRA 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme27622g00001 154 SMART PGNneu 66 135 - -
Trme27622g00001 154 CDD PUB_WLM 51 150 - -
Trme27622g00001 154 Gene3D - 47 150 - -
Trme27622g00001 154 MobiDBLite consensus disorder prediction 1 29 - -
Trme27622g00001 154 Pfam PUB domain 65 140 IPR018997 -
Trme27622g00001 154 SUPERFAMILY PUG domain-like 42 152 IPR036339 -
Trme27622g00001 154 PANTHER ZINC METALLOPROTEINASE-LIKE PROTEIN 1 153 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme27622g00001 64 116 C2H2 Transcription Factor Family AT2G01650 33.962 9.86e-06 42.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme27622g00001 - - psat:127083276 271.166