Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme27616g00001 ATGCAGCCGCCATCAGTTCAACCACCTCCACCACCACCACCGGTGTCTCCTTCTCGATCGAAGACATTGACAAGGGGATTATTGATTTTTGCAATTGTTGGATCAGTGGGAGGTTTTATTGGTATATGTTCAATAATCTATTGCTTATGGACAGGTGTTTGTTTTGGTAAAAAGAAAGTGCACAATTCTGTGCAACCAACAGTTACAAGAGGTAGTAGCAGCGGTTCAAATACTAGTTCGTCTTCGATTAAATCGGTGATTATGCGTCAAGGTTCGAGAATAATGAGGCGGCAGAGGAGTGGACCTTCGTCAACTAAGCATCAAGAAAGGGCAGAGGAGTTTTCTCTATCTGAGCTTATAGCAGCTACAAACCATTTCTCACTACAGAACAAAATTGGTGCCGGAAGCTTTGGTATTGTGTATAGAGGAAAATTATTCGACGGTCGCGAAGTAGCAATCAAGAGAAGCGAAACAGGTTTGAAGGTTAAAAAGTTTCAAGAGAAAGAGAGTGCATTTGAGTCTGAATTAGCTTTTTTGTCGCGTTTACACCACAAACACTTGGTTAGACTGGTTGGTTATTGTGAGGACAAAGATGAGAGGCTTTTGGTGTATGAGTACATGAAGAATGGTTCATTGCATAGTCATTTGCATGATAAGAACAATGTGGAAAAAAGTAGCAGTTTGTTGAATTCATGGAATATGAGGATCAAAATCGCTTTGGATGCTTCAAGAGGAATAGAGTATCTGCATAATTATGCAGTTCCTTCAATAATTCATAGAGATATTAAGTCTTCAAATATTCTTCTTGATGCAACTTGGACCGCAAGAGTATCTGATTTTGGATTATCATTGATGAGTCCAGAATCTGATATCAATTACAAACCAACAAAAACAGCAGGAACAGTTGGTTATATCGATCCCGAGTACTATGGTTTAAATGTGTTAACAGCAAAGAGTGATGTATATGGACTTGGAGTTGTATTACTTGAATTGTTAACAGGAAAAAGAGCTATATTTCGAAACGATGAAGATGGAGGAAATCCATCGAGTCTAGTAGATTTTGCAGTGCCTGCTATTTT 1079 0.3883 MQPPSVQPPPPPPPVSPSRSKTLTRGLLIFAIVGSVGGFIGICSIIYCLWTGVCFGKKKVHNSVQPTVTRGSSSGSNTSSSSIKSVIMRQGSRIMRRQRSGPSSTKHQERAEEFSLSELIAATNHFSLQNKIGAGSFGIVYRGKLFDGREVAIKRSETGLKVKKFQEKESAFESELAFLSRLHHKHLVRLVGYCEDKDERLLVYEYMKNGSLHSHLHDKNNVEKSSSLLNSWNMRIKIALDASRGIEYLHNYAVPSIIHRDIKSSNILLDATWTARVSDFGLSLMSPESDINYKPTKTAGTVGYIDPEYYGLNVLTAKSDVYGLGVVLLELLTGKRAIFRNDEDGGNPSSLVDFAVPAI 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme27616g00001 359 MobiDBLite consensus disorder prediction 1 20 - -
Trme27616g00001 359 ProSiteProfiles Protein kinase domain profile. 126 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme27616g00001 359 SUPERFAMILY Protein kinase-like (PK-like) 103 343 IPR011009 -
Trme27616g00001 359 MobiDBLite consensus disorder prediction 1 18 - -
Trme27616g00001 359 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
Trme27616g00001 359 FunFam serine/threonine-protein kinase-like protein CCR1 95 206 - -
Trme27616g00001 359 SMART serkin_6 126 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme27616g00001 359 ProSitePatterns Protein kinases ATP-binding region signature. 132 154 IPR017441 GO:0005524
Trme27616g00001 359 Gene3D Transferase(Phosphotransferase) domain 1 207 358 - -
Trme27616g00001 359 MobiDBLite consensus disorder prediction 66 108 - -
Trme27616g00001 359 MobiDBLite consensus disorder prediction 66 88 - -
Trme27616g00001 359 Pfam Protein kinase domain 127 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme27616g00001 359 Gene3D Phosphorylase Kinase; domain 1 87 206 - -
Trme27616g00001 359 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 47 359 IPR044815 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme27616g00001 Trme-Chr27616 136 1214 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme27616g00001 21 359 Receptor kinase-like Gene Family AT3G55950 74.571 7.14e-172 497
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Trme27616g00001 Pkinase 6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme27616g00001 - - gmx:100805573 555.444