Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme27593g00001 GCATTTGCTCGGTGGTACAGAGCGCCTGAGCTATTATTTGGTGCCAANNNNNNNNNNANNNNGGTAGATGTTTGGGCTACAGCTTGTGTATTTGCTGAACTTCTTCTTCGTAGACCCTTTTTGGAGGGTTCAACCGATACGCATCAAACACGGACGATTTTCACAGCATTTGGAACTCCATCACCTTCTCAGTGGCCTGATATGATGTACCTTAAATATTATGTTCAAGAAAAATATATTCCTGCTCCCCCGTTGCGTTCTTTATTTCCAATGGCAAGTGATGATGCTTTAGATTTGTTGTCAAAGATGTTTACCTATGATCCAAATGCTAGAATTTCAGTGCAGAAGGCATTAGAACACAGGTACTTTTCTTCTGCACCTCTGCCCACAGATCCAGAAAAGCTTCCAAGACCTGTTCCCAAGAGGGAATCTAGTGTCTCAGATCTGAATTCTTTTCAATTATCACCTTCTAGAAAGATTAGAAGAGTGATGCCAATGTGTGATGGATTTGAAGGCAATACG 522 0.4061 AFARWYRAPELLFGAXXXXXXVDVWATACVFAELLLRRPFLEGSTDTHQTRTIFTAFGTPSPSQWPDMMYLKYYVQEKYIPAPPLRSLFPMASDDALDLLSKMFTYDPNARISVQKALEHRYFSSAPLPTDPEKLPRPVPKRESSVSDLNSFQLSPSRKIRRVMPMCDGFEGNT 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme27593g00001 174 MobiDBLite consensus disorder prediction 128 147 - -
Trme27593g00001 174 Pfam Protein kinase domain 4 123 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme27593g00001 174 ProSiteProfiles Protein kinase domain profile. 1 123 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme27593g00001 174 PANTHER CELL DIVISION PROTEIN KINASE 3 129 - -
Trme27593g00001 174 SUPERFAMILY Protein kinase-like (PK-like) 4 130 IPR011009 -
Trme27593g00001 174 Gene3D Transferase(Phosphotransferase) domain 1 3 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme27593g00001 Trme-Chr27593 169 1214 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme27593g00001 1 165 Core Cell Cycle Gene Families AT1G18040 65.476 6.69e-74 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Trme27593g00001 Pkinase 5.6e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme27593g00001 K02202 - jre:109020969 262.307