Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme275425g00001 ATGCAACAAGGATTCGCTCGCATGGACGATGAAGTTCAGAGATGGAATAGTAGCAGCCAAACCGTTACTTGCAGATGCGAGCTACAAACTCCTCACTGCGACGCCGTCGGATCCACCGCCGTTGTGGCCGTTGTCACACCGGACAAAATAATCGTCTCAAACTGCGGCGACTCCCGCGCTGTTCTCTGCCGTAACGGCGTCGCCATCCCACTCTCCTCCGATCACAAGGTAATTTAA 237 0.5401 MQQGFARMDDEVQRWNSSSQTVTCRCELQTPHCDAVGSTAVVAVVTPDKIIVSNCGDSRAVLCRNGVAIPLSSDHKVI 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme275425g00001 78 PANTHER PROTEIN PHOSPHATASE 1 77 IPR015655 GO:0004722|GO:0006470
Trme275425g00001 78 SUPERFAMILY PP2C-like 2 77 IPR036457 -
Trme275425g00001 78 Gene3D - 1 78 IPR036457 -
Trme275425g00001 78 Pfam Protein phosphatase 2C 5 77 IPR001932 -
Trme275425g00001 78 ProSiteProfiles PPM-type phosphatase domain profile. 1 78 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme275425g00001 Trme-Chr275425 4 240 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme275425g00001 1 76 PP2C-type Phosphatase Gene Family AT1G07430 71.053 2.36e-35 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme275425g00001 K14497 - gmx:100796161 135.961