Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme27534g00001 ATGATCGAAGACTCTACTAGTCCTGGAAATGAAGTGAACTCGAGCAATGTGCACTCTGGTTCAAATAAACCTGACGTGGCATCAACTAGCAGTACTATAAACAAAGGCTGCAAAGCAGTTGCAAAGGTGGTGAAGAACACCAAGTTGAAAGAGCAACTTGAGTTTTCACAAAGCTCAAAGAGTAGTCAAGGYGAGTACAGTAGTAGTACTAGTACCAGTGATGARAGCAACATGAGTGGYTCAAGTTTCGGCAGTAGGCCTCACATGTCAAAGGATGTTAGGTGGGAAGCCATTCGACATGCTCAAATGCAGCATGGAGCCTTGGGCTTGAGACATTTCAATCTTTTGAAGAAACTTGGTTGTGGAGACATTGGGACTGTTTATCTCGCTGAACTAATTGGCACAAGCTGTTTGTTTGCTATTAAGGTCATGGACATCGAATTTTTGGCAAGGCGGAAGAAGATACCTAGGGCTCAAACTGAAAAAGAAATATTAAGGATGCTGGACCATCCGTTTCTTCCTACATTGTATGTGCAATTTACATCAGATAATCTCTCATGTTTGGTCATGGAGTATTGTCCAGGTGGAGATCTTCATGTTCTACGGCAGAAGCAGCTTGATAGATGTTTTTCGGAGCTAGCAGCAAG 647 0.4266 MIEDSTSPGNEVNSSNVHSGSNKPDVASTSSTINKGCKAVAKVVKNTKLKEQLEFSQSSKSSQGEYSSSTSTSDESNMSGSSFGSRPHMSKDVRWEAIRHAQMQHGALGLRHFNLLKKLGCGDIGTVYLAELIGTSCLFAIKVMDIEFLARRKKIPRAQTEKEILRMLDHPFLPTLYVQFTSDNLSCLVMEYCPGGDLHVLRQKQLDRCFSELAA 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme27534g00001 215 ProSiteProfiles Protein kinase domain profile. 113 215 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme27534g00001 215 Gene3D Phosphorylase Kinase; domain 1 107 214 - -
Trme27534g00001 215 SUPERFAMILY Protein kinase-like (PK-like) 88 206 IPR011009 -
Trme27534g00001 215 MobiDBLite consensus disorder prediction 52 86 - -
Trme27534g00001 215 Pfam Protein kinase domain 114 204 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme27534g00001 215 MobiDBLite consensus disorder prediction 1 33 - -
Trme27534g00001 215 FunFam Serine/threonine-protein kinase D6PK-like 111 196 - -
Trme27534g00001 215 MobiDBLite consensus disorder prediction 52 88 - -
Trme27534g00001 215 PANTHER FLIPPASE KINASE 1-RELATED 30 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme27534g00001 Trme-Chr27534 502 1148 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme27534g00001 29 215 AGC Kinase Gene Family AT3G52890 75.000 7.85e-94 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Trme27534g00001 Pkinase 2.2e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme27534g00001 - - mtr:11427174 334.724