Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme27488g00001 ATGAAAGCAACTAAAACCGTTCTCCTCCAGAAGCCCGATACAGCCAAAGCTTTTGACACATTCCTTGAGAAGAGGAAACCTGCTGCACAATCAATTGCATCTCCACTGACAACCAGAGAAGAACTGGAAGGGGTATCAGTACCAACAACAACGCCTGAAAATAGTGCTGCCTTCTCAACAACAACAATACCAACACCGGCGACAACGACAAAAACAATACCAACACCACTGACAACCACAACAACAACAACAACAACAAACAACATCAGCTTGGAAGAATCTCAAGGAGTTTCAGAACAGGAGGTGTGGTCTGCAGTGCAGGAAAGAGCACTAGTTCAAGCTTTAAAAACTTTTCCAAAGGAAGCTAACCAGAGATGGGAACGAGTAGCTGCAGCTGTACCTGGGAAGACTGTGAACCAGTGCAAGAAAAAATTTGCCATGATGAAGGAAAATTTCAGGAACAAGAAAACGGCAGTTTGA 480 0.4396 MKATKTVLLQKPDTAKAFDTFLEKRKPAAQSIASPLTTREELEGVSVPTTTPENSAAFSTTTIPTPATTTKTIPTPLTTTTTTTTTNNISLEESQGVSEQEVWSAVQERALVQALKTFPKEANQRWERVAAAVPGKTVNQCKKKFAMMKENFRNKKTAV 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme27488g00001 159 SMART sant 99 151 IPR001005 -
Trme27488g00001 159 SUPERFAMILY Homeodomain-like 101 155 IPR009057 -
Trme27488g00001 159 FunFam Myb family transcription factor 97 157 - -
Trme27488g00001 159 CDD SANT 103 149 IPR001005 -
Trme27488g00001 159 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 2 158 IPR044634 GO:0006450|GO:0030544|GO:0043022|GO:0051083
Trme27488g00001 159 Pfam Myb-like DNA-binding domain 102 147 IPR001005 -
Trme27488g00001 159 Gene3D - 95 159 - -
Trme27488g00001 159 ProSiteProfiles SANT domain profile. 98 153 IPR017884 -
Trme27488g00001 159 ProSiteProfiles Myb-like domain profile. 103 149 IPR001005 -
Trme27488g00001 159 MobiDBLite consensus disorder prediction 43 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme27488g00001 Trme-Chr27488 26 505 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trme27488g00001 Myb_DNA-binding 4.5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme27488g00001 K09522 - zju:125424379 182.956