Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme274191g00001 AGGGTTCAATCTTCATGGTCTGTCATTGATGAACAGCTTAGGGAAGAAATAAGGATTTCCACTAAGAAAACCTTGTTGCCAGCTTATGGAAACTTCATTGGGAGGTTTCAAAGTGTTCCGGAACTTGGTAAGCATGCTGAGAAATATATTAAGTATGAAACAGAGGATATTGAAGCAAGAATCAACGGTTTGTTTCAGGGTAGCAGTTGA 210 0.3905 RVQSSWSVIDEQLREEIRISTKKTLLPAYGNFIGRFQSVPELGKHAEKYIKYETEDIEARINGLFQGSS 69
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme274191g00001 69 PANTHER EXOCYST COMPLEX PROTEIN EXO70 1 67 IPR004140 GO:0000145|GO:0006887
Trme274191g00001 69 SUPERFAMILY Cullin repeat-like 1 65 IPR016159 -
Trme274191g00001 69 Gene3D Exocyst complex component Exo70 1 69 - -
Trme274191g00001 69 Pfam Exo70 exocyst complex subunit 1 62 IPR046364 GO:0000145|GO:0005546|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme274191g00001 Trme-Chr274191 3 212 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme274191g00001 1 69 EXO70 exocyst subunit family AT5G58430 60.870 1.44e-25 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme274191g00001 K07195 - gmx:100803694 112.849