Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2740g00001 ATGAAAACCAAGGTTCAAGTTTCTGAAAGTAAAGAGATTGATTTATACGGATTGTCCCTTACCAAGATATCTGATATCCATAGTGAAGCAGCTGCTCCTGAATTTTTAGTTGATGTTATCGGTGTGATTACTGGAATGTCTGCTGAGAGGGAATACGTTCGTGATGGAAGAGTTGTTAAGATGATTGTGTTTGAGTTGACTGATCAGAGTGGAAAATGTGAATGTGCCTTATTTGGTGATTATGTCCATTCACTTCAAAGTATGCTTGGAAAGTCCCATGATGGGTTGCCGGTTGTTGTCGTTCAATTTGCGAAAATTAAAACTTTTAGAGGGAATATTTCAATTCAAAATGTTATAAATGCTACAAGGCTATTTGTTAATCCTGCTATTGAAGAGGCTGATGCATTTAAAAATGGGATTGCCGTTCATGGGATTGAAACATCCTCACCAATTCCTTTGCTCGGTCCTCGAGCTAGGCCTTCCTATGAGGAAGATTTTCTGTTGAATTATCCCAAAAAAACTATAGTTGAGTTGGTTGAAAAGGCGGAAGATGGTGTGTATGTTGTATGTGCTATTGTTGATGGTTTGGTTGAGGGTGAGGAATGGTGGTATCCAGCTTGCAATTGTCATAGGAGTGTGGTTGCTGATTCTGGGGCCTATTACTGTAAAATTTGTGTCAAGCATGTGTTCCAGATGTTTCCCAGGTACAAGGTTAAGTTTCGTGTTGCAGATTCAACTGGAGATGCTGTTTTCGTTGTTTTTGATAGTGACATGCGTTTGCTCATTCAGAAAGACTGTGGTGACTTGGTTTCTACTTTCAAGGCTGAATCATCAATTGAGTATCCTCCTGATTTTCAATTGCTCAAAGGGAAGAGGTTATTGTTTAAGGTTGAGAAGGTTACAACTGCTTTTGAGCAGTTTGATGTTTCTTTCAGGGTAAAGCGTGTGTGCAATGAGCTAGCCACAATTGAAGCTTTTGGTGTTCCAGAAGTAACCAATAGTCCTACCAGGGTGTTGTCTAGTGGTTTTTCCGAGTCTGGAGAGGAGTCTGATATGGAACATGAATTTGTTGAAGATTCTCAGAATGAGGATATTGTGGTGCACGTTGCTGGCAACGCTGGTTGTGCTGAAGCGTCNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNTGAAGTTATAAGTTTGGAAGATGACTCTGATGCTGGAATCGAAGTTTTTGTCTCTGCTGGATCTAAGCTTGCTAAGGATGCAAAGATGTTGGCTGTTAAGAGGAACCTGTCTTCTGTTTTTGCTGAGTGCCATGATGTAGGAGAAACAAGCAATCCATCCAAGTGTTTGAAGACTAAGGAAGAATGA 1365 0.3919 MKTKVQVSESKEIDLYGLSLTKISDIHSEAAAPEFLVDVIGVITGMSAEREYVRDGRVVKMIVFELTDQSGKCECALFGDYVHSLQSMLGKSHDGLPVVVVQFAKIKTFRGNISIQNVINATRLFVNPAIEEADAFKNGIAVHGIETSSPIPLLGPRARPSYEEDFLLNYPKKTIVELVEKAEDGVYVVCAIVDGLVEGEEWWYPACNCHRSVVADSGAYYCKICVKHVFQMFPRYKVKFRVADSTGDAVFVVFDSDMRLLIQKDCGDLVSTFKAESSIEYPPDFQLLKGKRLLFKVEKVTTAFEQFDVSFRVKRVCNELATIEAFGVPEVTNSPTRVLSSGFSESGEESDMEHEFVEDSQNEDIVVHVAGNAGCAEASXXXXXXXXXXXXXXEVISLEDDSDAGIEVFVSAGSKLAKDAKMLAVKRNLSSVFAECHDVGETSNPSKCLKTKEE 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2740g00001 454 CDD RPA1_DBD_B_like 38 137 - -
Trme2740g00001 454 Gene3D - 12 147 IPR012340 -
Trme2740g00001 454 SUPERFAMILY Nucleic acid-binding proteins 170 315 IPR012340 -
Trme2740g00001 454 Coils Coil 394 401 - -
Trme2740g00001 454 Gene3D - 168 325 IPR012340 -
Trme2740g00001 454 Pfam Replication factor-A C terminal domain 196 305 IPR013955 -
Trme2740g00001 454 CDD RPA1_DBD_C 173 316 IPR047192 -
Trme2740g00001 454 SUPERFAMILY Nucleic acid-binding proteins 18 144 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme2740g00001 Trme-Chr2740 180 2160 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2740g00001 36 269 Core DNA Replication Machinery Family AT5G08020 25.203 2.53e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme2740g00001 - - tpra:123893724 440.269