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Gene search
Sequence information
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Gene
Cds
Cds_length
GC_content
Pep
Pep_length
Trme2740g00001
ATGAAAACCAAGGTTCAAGTTTCTGAAAGTAAAGAGATTGATTTATACGGATTGTCCCTTACCAAGATATCTGATATCCATAGTGAAGCAGCTGCTCCTGAATTTTTAGTTGATGTTATCGGTGTGATTACTGGAATGTCTGCTGAGAGGGAATACGTTCGTGATGGAAGAGTTGTTAAGATGATTGTGTTTGAGTTGACTGATCAGAGTGGAAAATGTGAATGTGCCTTATTTGGTGATTATGTCCATTCACTTCAAAGTATGCTTGGAAAGTCCCATGATGGGTTGCCGGTTGTTGTCGTTCAATTTGCGAAAATTAAAACTTTTAGAGGGAATATTTCAATTCAAAATGTTATAAATGCTACAAGGCTATTTGTTAATCCTGCTATTGAAGAGGCTGATGCATTTAAAAATGGGATTGCCGTTCATGGGATTGAAACATCCTCACCAATTCCTTTGCTCGGTCCTCGAGCTAGGCCTTCCTATGAGGAAGATTTTCTGTTGAATTATCCCAAAAAAACTATAGTTGAGTTGGTTGAAAAGGCGGAAGATGGTGTGTATGTTGTATGTGCTATTGTTGATGGTTTGGTTGAGGGTGAGGAATGGTGGTATCCAGCTTGCAATTGTCATAGGAGTGTGGTTGCTGATTCTGGGGCCTATTACTGTAAAATTTGTGTCAAGCATGTGTTCCAGATGTTTCCCAGGTACAAGGTTAAGTTTCGTGTTGCAGATTCAACTGGAGATGCTGTTTTCGTTGTTTTTGATAGTGACATGCGTTTGCTCATTCAGAAAGACTGTGGTGACTTGGTTTCTACTTTCAAGGCTGAATCATCAATTGAGTATCCTCCTGATTTTCAATTGCTCAAAGGGAAGAGGTTATTGTTTAAGGTTGAGAAGGTTACAACTGCTTTTGAGCAGTTTGATGTTTCTTTCAGGGTAAAGCGTGTGTGCAATGAGCTAGCCACAATTGAAGCTTTTGGTGTTCCAGAAGTAACCAATAGTCCTACCAGGGTGTTGTCTAGTGGTTTTTCCGAGTCTGGAGAGGAGTCTGATATGGAACATGAATTTGTTGAAGATTCTCAGAATGAGGATATTGTGGTGCACGTTGCTGGCAACGCTGGTTGTGCTGAAGCGTCNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNTGAAGTTATAAGTTTGGAAGATGACTCTGATGCTGGAATCGAAGTTTTTGTCTCTGCTGGATCTAAGCTTGCTAAGGATGCAAAGATGTTGGCTGTTAAGAGGAACCTGTCTTCTGTTTTTGCTGAGTGCCATGATGTAGGAGAAACAAGCAATCCATCCAAGTGTTTGAAGACTAAGGAAGAATGA
1365
0.3919
MKTKVQVSESKEIDLYGLSLTKISDIHSEAAAPEFLVDVIGVITGMSAEREYVRDGRVVKMIVFELTDQSGKCECALFGDYVHSLQSMLGKSHDGLPVVVVQFAKIKTFRGNISIQNVINATRLFVNPAIEEADAFKNGIAVHGIETSSPIPLLGPRARPSYEEDFLLNYPKKTIVELVEKAEDGVYVVCAIVDGLVEGEEWWYPACNCHRSVVADSGAYYCKICVKHVFQMFPRYKVKFRVADSTGDAVFVVFDSDMRLLIQKDCGDLVSTFKAESSIEYPPDFQLLKGKRLLFKVEKVTTAFEQFDVSFRVKRVCNELATIEAFGVPEVTNSPTRVLSSGFSESGEESDMEHEFVEDSQNEDIVVHVAGNAGCAEASXXXXXXXXXXXXXXEVISLEDDSDAGIEVFVSAGSKLAKDAKMLAVKRNLSSVFAECHDVGETSNPSKCLKTKEE
454
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Annotation information
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Seq ID
Length
Analysis
Description
Start
End
IPR
GO
Trme2740g00001
454
CDD
RPA1_DBD_B_like
38
137
-
-
Trme2740g00001
454
Gene3D
-
12
147
IPR012340
-
Trme2740g00001
454
SUPERFAMILY
Nucleic acid-binding proteins
170
315
IPR012340
-
Trme2740g00001
454
Coils
Coil
394
401
-
-
Trme2740g00001
454
Gene3D
-
168
325
IPR012340
-
Trme2740g00001
454
Pfam
Replication factor-A C terminal domain
196
305
IPR013955
-
Trme2740g00001
454
CDD
RPA1_DBD_C
173
316
IPR047192
-
Trme2740g00001
454
SUPERFAMILY
Nucleic acid-binding proteins
18
144
IPR012340
-
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Duplication type information
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Gene
Chromosome
Start
End
Duplicated_type
Trme2740g00001
Trme-Chr2740
180
2160
Dispersed
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Functional genes information
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Gene
Gene_start
Gene_end
Function
Ath_gene
Identity(%)
E-value
Score
Trme2740g00001
36
269
Core DNA Replication Machinery Family
AT5G08020
25.203
2.53e-10
60.8
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Pathway information
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Query
KO
Definition
Second KO
KEGG Genes ID
GHOSTX Score
Trme2740g00001
-
-
tpra:123893724
440.269
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