Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme274066g00001 ATGGAAGTTGCAACTATAAGCAGTACTCATCATCTTAATTTGGTGCGGCTTATTGGCTTTTGCTCTGAAGGACGCCACAGGCTTTTAGTCTACGAGTTCATGAAAAATAGTTCCCTGGATAATTTTTTATTCCCAAAAGAAGAGCAGTCGGGAAAGCTGTTGAATTGGGAGTATCGGTACAATATTGCACTTGGCACTGCAAGAGGAATCACGTACCTTCATGAGGAGTGTCGCGACTGCATAGTCCACTGTGATATCAAACCTGAAAACATCCTCTTGGACGATAATTACGTCGCTAAAGTCTCTGATTTCGGTCTTGCAAAGCTCGTTAAT 333 0.4234 MEVATISSTHHLNLVRLIGFCSEGRHRLLVYEFMKNSSLDNFLFPKEEQSGKLLNWEYRYNIALGTARGITYLHEECRDCIVHCDIKPENILLDDNYVAKVSDFGLAKLVN 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme274066g00001 111 ProSitePatterns Serine/Threonine protein kinases active-site signature. 81 93 IPR008271 GO:0004672|GO:0006468
Trme274066g00001 111 Gene3D Transferase(Phosphotransferase) domain 1 35 111 - -
Trme274066g00001 111 ProSiteProfiles Protein kinase domain profile. 1 111 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme274066g00001 111 PANTHER OS07G0415500 PROTEIN 1 111 - -
Trme274066g00001 111 SUPERFAMILY Protein kinase-like (PK-like) 2 110 IPR011009 -
Trme274066g00001 111 FunFam Protein kinase superfamily protein 34 109 - -
Trme274066g00001 111 Gene3D Phosphorylase Kinase; domain 1 1 34 - -
Trme274066g00001 111 Pfam Protein kinase domain 2 110 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme274066g00001 Trme-Chr274066 1 333 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme274066g00001 2 109 Receptor kinase-like Gene Family AT1G66910 58.333 6.71e-38 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Trme274066g00001 Pkinase 4.5e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme274066g00001 - - cam:101506838 230.335