Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme273g00001 ATGGTCAGCACCAGTAGTAGCAACTCTTCAGCTTTGGTAACATCTTCAAGGAGAAATTATTATGACGTGTTTGTGAGCTTCAGAGGTAAAGACACACGCTACAACTTCACTGATCATCTTTTTGCTGCCTTCCAAAGAAAAGGTATTTTTGCATTCAGAGATGAAACTAAGCTCAACAAAGGTGAATACATAGCACCTGAGCTCTTTCGTGCAATCGAAGATTCAAAGATTTTCGTTGTGAAAGGAAGTTATGGTGAAGCCTTTGCCAAACATGAACAAAGATTCCAACAAGACTCTGAGAAGATGTCGAGATGGAGGGAAGCTCTAACACAAGTGGCGAATCTCTCTGGATGGAATCTACATCATAAGCCAGAATATGCAGAGATTGAAAAGATCGCTGAAGAGATTATATATATATTGGGAAACAAGTTTTCAAGTCTTCCAAAAGATTTAGTTGGGATGGATTCTTCTATAGAAGAATTAGAAAAGCATTTACTTTTGGACTCGATTGATGATGTAAGGGTTGTAGGAATTTGTGGGATGGGTGGAATAGGCAAGACAACTCTCGCTACTGCCTTGTACAACAAAATCTCTCATCAATTTCCTATGTGCTGCGTTATTGATGATTTAAGCAAAATTTATAGGCATGATGGTCTAATCAGCGCACAAAAGCAAATTCTACTTCAAACCCTTGGCGAAGAACAACTTCAGACATGCAATCTTTACAACATATCTAACTTGATACGAAGTAGGCTACACCGTGTAAAGGCGCTTATAATACTTGATAATGTTGACCAAGTTGAACAACTTGAGAAATTAGCTGTGAGTCGTGAATGGTTAGGTGTGGGGAGTAGAATTATTATAATTTCAAGAGATGAGCATATCTTGAAAGAGTATGGAGTGGATGTGATCTACAAAGTTCCACTCTTGAATCGGACTGACTCACTTCAATTATTTAGTCGAAAAGCTTTCAAACTTGATCATATTATGAGTAGTTATGATAAGTTGGCATTTGACATACTAAGGTATGCTAATGGCCTACCACTAGCAATTAAAGTATTGGGCTCATTTTTGTGTGGTCGCAATATCTCTGAATGGAAAAGTGCACTGGGTAGATTGAGTGAAAGTCCAAACAAAGATATCATGGATGTGTTGCGGTTAAGTTTTGATGGGTTGGAGGAAATGGAAAAAGAAATATTTCTTCACATTGCTTGTTTTTTCATCTCTCTCAATGTGAAATATGTGAAGAATGTTCTAAATTGTTGTGGATTTCATGCTGATATTGGATTAAGAGTTTTAATTGATAAATCACTTATAAGCATTTGGGGAGTAGACTGCCTTGAAATGCATGGTTTGTTAAGAGAGTTGGGAAGGAAAATTGTTGTAGAAAATTTAAGCAAAGAGTCAAGAAAGTGGAGTAGGCTGTGGCTCCACGAACATTTCGACAATGTTATGTTGGAGAATATGGTAAAGTAG 1476 0.3726 MVSTSSSNSSALVTSSRRNYYDVFVSFRGKDTRYNFTDHLFAAFQRKGIFAFRDETKLNKGEYIAPELFRAIEDSKIFVVKGSYGEAFAKHEQRFQQDSEKMSRWREALTQVANLSGWNLHHKPEYAEIEKIAEEIIYILGNKFSSLPKDLVGMDSSIEELEKHLLLDSIDDVRVVGICGMGGIGKTTLATALYNKISHQFPMCCVIDDLSKIYRHDGLISAQKQILLQTLGEEQLQTCNLYNISNLIRSRLHRVKALIILDNVDQVEQLEKLAVSREWLGVGSRIIIISRDEHILKEYGVDVIYKVPLLNRTDSLQLFSRKAFKLDHIMSSYDKLAFDILRYANGLPLAIKVLGSFLCGRNISEWKSALGRLSESPNKDIMDVLRLSFDGLEEMEKEIFLHIACFFISLNVKYVKNVLNCCGFHADIGLRVLIDKSLISIWGVDCLEMHGLLRELGRKIVVENLSKESRKWSRLWLHEHFDNVMLENMVK 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme273g00001 491 SUPERFAMILY "Winged helix" DNA-binding domain 380 480 IPR036390 -
Trme273g00001 491 Pfam TIR domain 21 80 IPR000157 GO:0007165
Trme273g00001 491 Gene3D - 309 393 IPR042197 -
Trme273g00001 491 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 483 IPR044974 GO:0006952
Trme273g00001 491 Gene3D - 13 80 IPR035897 -
Trme273g00001 491 ProSiteProfiles TIR domain profile. 19 140 IPR000157 GO:0007165
Trme273g00001 491 Gene3D - 142 304 IPR027417 -
Trme273g00001 491 SMART till_3 20 115 IPR000157 GO:0007165
Trme273g00001 491 SUPERFAMILY Toll/Interleukin receptor TIR domain 15 118 IPR035897 -
Trme273g00001 491 Gene3D - 81 141 IPR035897 -
Trme273g00001 491 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 145 403 IPR027417 -
Trme273g00001 491 Pfam NB-ARC domain 156 379 IPR002182 GO:0043531
Trme273g00001 491 PRINTS Disease resistance protein signature 175 190 - -
Trme273g00001 491 PRINTS Disease resistance protein signature 344 358 - -
Trme273g00001 491 PRINTS Disease resistance protein signature 251 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme273g00001 Trme-Chr273 2285 4094 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme273g00001 152 476 WRKY Transcription Factor Family AT5G45050 35.583 1.97e-52 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme273g00001 - - tpra:123883787 653.284