Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme273975g00001 CTTCTAGATTTCAAGATGAACGCTAAGGTTTCGGATTTCGGGTTATCTCGTTTGGCTCAAACAGATATGAGTCATATCTCAACTTGTGCTCAAGGAACACTCGGGTATCTTGATCCTGAGTATTACAGAAACTATCAGTTAACTGATAAGAGTGATGTTTATAGCTTCGGAGTTGTGTTGCTTGAGCTTTTGACGTCTCAGAAGGCGATAGATTTTAACAGGGCTTCGGATGATGTGAACTTGGCAGTTTATGTGCAGAGGATGATGGATGAAGAGAGGTTGATAGAGGTTATTGATCCTGTTTTGAAGGACGGAGCTAGTAATATAGAGCTTGATACTATGAAGGCTTTGGCATTTTTGGC 362 0.4088 LLDFKMNAKVSDFGLSRLAQTDMSHISTCAQGTLGYLDPEYYRNYQLTDKSDVYSFGVVLLELLTSQKAIDFNRASDDVNLAVYVQRMMDEERLIEVIDPVLKDGASNIELDTMKALAFLA 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme273975g00001 121 ProSiteProfiles Protein kinase domain profile. 1 120 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme273975g00001 121 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 1 103 IPR044652 GO:0004672
Trme273975g00001 121 SUPERFAMILY Protein kinase-like (PK-like) 1 99 IPR011009 -
Trme273975g00001 121 Gene3D Transferase(Phosphotransferase) domain 1 1 121 - -
Trme273975g00001 121 Pfam Protein tyrosine and serine/threonine kinase 1 70 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme273975g00001 Trme-Chr273975 2 363 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme273975g00001 1 121 Receptor kinase-like Gene Family AT5G02070 65.873 9.25e-52 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Trme273975g00001 PK_Tyr_Ser-Thr 3.9e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme273975g00001 - - gmx:100305415 214.927