Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme27395g00001 ATGGAGTGCTACAAGGAGGAGATTTTTGGCCCAGTTCTTCTTCTCATGGAGGCTGATAGCTTGGAAGAGGCCATAAGCATTGTCAACGGAAACAAGTACGGAAATGGTGCTACTATATTCACTAGATCTGGTGTCGCTGCAAGGAAATTTCAGACCGAAATCGAGGCAGGGCAGGTGGGTATCAATGTTCCTATTCCCGTTCCTTTGCCCTTTTTCTCCTTTACTGGCAACAAGGCATCATTTGCAGGCGATCTTAATTTCTACGGCAAGGCAGGGGTTAACTTTTATACACAAATAAAAACAGTAACTCAGAATTGGAAGGATTCGGATAGTGAGGACAAGATTAACATGGCAATGCCAACCTCTCAAAAATCTTAA 378 0.4339 MECYKEEIFGPVLLLMEADSLEEAISIVNGNKYGNGATIFTRSGVAARKFQTEIEAGQVGINVPIPVPLPFFSFTGNKASFAGDLNFYGKAGVNFYTQIKTVTQNWKDSDSEDKINMAMPTSQKS 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme27395g00001 125 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 1 122 IPR010061 GO:0004491
Trme27395g00001 125 Pfam Aldehyde dehydrogenase family 1 102 IPR015590 GO:0016491
Trme27395g00001 125 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 1 112 IPR016163 GO:0016620
Trme27395g00001 125 SUPERFAMILY ALDH-like 1 108 IPR016161 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme27395g00001 Trme-Chr27395 69 1147 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme27395g00001 1 90 Aldehyde Dehydrogenase Gene Family AT2G14170 84.444 4.37e-50 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme27395g00001 K00140 - gmx:100783569 233.032