Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme27372g00001 CTTGGAGTAGCTCGTGGTATTGCTTATTTGCATGGAGGATGTGACATGCAAATTTTGCATTTTGACATAAAGCCCCATAACATCCTTCTCGACGAGAACTTTATCCCAAAGGTTTCCGATTTTGGTCTTGCAAAGCTTTATCCTAATGACATGAGCATTGTGACTCTAACTGCAGCAAGAGGAACAATTGGTTACATGGCTCCTGAATTATTCTACCAAAATATTGGAGGAGTGTCTTACAAGGCAGATGTCTACAGTTTTGGAATGCTTTTGATGGAAATGGCAAGTAAGAGAAGAAATTTGAATCCACATGCAGATCGTTCAAGCCAACTTTTCTTTCCCTTTTGGNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNACTAATGAGGAAATGATTAATGTGAAAAAGATGTTCATAACTGCGTTATGGTGTATACAATTAAAACCAAGTGATCGTCCTTCAATGAACAATGTAATAGAGATGCTTGAAGGAAATATTGAGAACATCAAAATGCCTCCAAAACCTTCTCTATATCCAAATGAAACTATTCAGAATGATCTTGAAGAAACCTCCGATGAAATTGAGTCAGATGCTGATGATGACTCTGTTAGTTTCTTGAAGGAAACGAAATCATAG 654 0.3456 LGVARGIAYLHGGCDMQILHFDIKPHNILLDENFIPKVSDFGLAKLYPNDMSIVTLTAARGTIGYMAPELFYQNIGGVSYKADVYSFGMLLMEMASKRRNLNPHADRSSQLFFPFWXXXXXXXXXXXXXXXXTNEEMINVKKMFITALWCIQLKPSDRPSMNNVIEMLEGNIENIKMPPKPSLYPNETIQNDLEETSDEIESDADDDSVSFLKETKS 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme27372g00001 217 Coils Coil 186 206 - -
Trme27372g00001 217 MobiDBLite consensus disorder prediction 179 217 - -
Trme27372g00001 217 Gene3D Transferase(Phosphotransferase) domain 1 1 180 - -
Trme27372g00001 217 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 189 IPR045874 GO:0004672
Trme27372g00001 217 SMART serkin_6 2 168 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme27372g00001 217 ProSiteProfiles Protein kinase domain profile. 1 172 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme27372g00001 217 Pfam Protein kinase domain 3 166 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme27372g00001 217 ProSitePatterns Serine/Threonine protein kinases active-site signature. 18 30 IPR008271 GO:0004672|GO:0006468
Trme27372g00001 217 SUPERFAMILY Protein kinase-like (PK-like) 2 191 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme27372g00001 Trme-Chr27372 3 656 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme27372g00001 1 198 Receptor kinase-like Gene Family AT5G38280 46.798 9.22e-59 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trme27372g00001 Pkinase 6.5e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme27372g00001 - - vvo:131600386 330.872