Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme273720g00001 | AATTTTAGAGCTTTGTGCACAGGGGAGAAAGGCGAGAGTGCAAGTGGTGTAAAACTTCATTACAAGGGAACACCATTTCATCGGATAGTATCCGGTTTTGTGATTCAGGGTGGAGATATTGTTCATCATGATGGCAAAGCATCCGAATCTATATATGGTGGCACCTTTCCTGACGAGAATTTCAGGATTAAACATTCTCATGCTGGTGTGTAG | 213 | 0.4225 | NFRALCTGEKGESASGVKLHYKGTPFHRIVSGFVIQGGDIVHHDGKASESIYGGTFPDENFRIKHSHAGV | 70 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme273720g00001 | 70 | ProSiteProfiles | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. | 1 | 70 | IPR002130 | GO:0000413|GO:0003755 | |
| Trme273720g00001 | 70 | Gene3D | - | 1 | 70 | IPR029000 | - | |
| Trme273720g00001 | 70 | ProSitePatterns | Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. | 21 | 38 | IPR020892 | GO:0003755|GO:0006457 | |
| Trme273720g00001 | 70 | SUPERFAMILY | Cyclophilin-like | 1 | 70 | IPR029000 | - | |
| Trme273720g00001 | 70 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 1 | 70 | - | - | |
| Trme273720g00001 | 70 | Pfam | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 1 | 70 | IPR002130 | GO:0000413|GO:0003755 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme273720g00001 | 1 | 70 | U-box Gene Family | AT5G67530 | 43.662 | 1.07e-07 | 45.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme273720g00001 | - | - | gmx:100808983 | 141.354 |