Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme27365g00001 GGGCCATCTGGCAGTATATGCTCAACACTTCCTTTTGTAGCAGTTCCGACTATTCTCAACTGCCGTGGTAAGAGCTGGGGCATGACTTATAATGGCCAAAACAGATGCAAGCAGTTTGATTCCAATGGCTGGGGAAATTTTGTKAAAGGTAATAATTTGAAGCTTGGAGACGCATGYRTTTTCGAGCTCATGGAGCACAGTAAAGATAAAATTGTCTTTGAAGTTCAAATTCTTAGAGGTGACTTCCTGTTCGAATTTTCTGGAATTGGTGAGAGTGAAGAAGAGCCAATTTTCCTATCCGAATTTCCTGGAACTGGTGAGATTGATTCACCCTTTGTCATTGACTAG 348 0.4138 GPSGSICSTLPFVAVPTILNCRGKSWGMTYNGQNRCKQFDSNGWGNFVKGNNLKLGDACXFELMEHSKDKIVFEVQILRGDFLFEFSGIGESEEEPIFLSEFPGTGEIDSPFVID 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme27365g00001 115 Pfam B3 DNA binding domain 18 74 IPR003340 GO:0003677
Trme27365g00001 115 SUPERFAMILY DNA-binding pseudobarrel domain 17 79 IPR015300 -
Trme27365g00001 115 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 18 81 IPR044837 -
Trme27365g00001 115 CDD B3_DNA 17 79 IPR003340 GO:0003677
Trme27365g00001 115 Gene3D - 3 81 IPR015300 -
Trme27365g00001 115 ProSiteProfiles B3 DNA-binding domain profile. 17 81 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme27365g00001 Trme-Chr27365 69 416 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trme27365g00001 B3 8.3e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme27365g00001 - - tpra:123884363 201.06