Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme273034g00001 TTGAGGGAAAAATATGTAGAAAGTCTTCCAACATCTGGTACCAGTAGTTGGAAGCTTTCAACCTTTCCTGAACCTCTGAGCATCAACGTCGCTACGTTCGAGAAGCCTTTGCGCAAGTTGACGTTCGCACATCTTCTCGAAGCTACCAACGGTTTCAGCTCAGAAAGTTTGATAGGTTCAGGAGGTTTCGGGGAAGTGTATAAGGCTAAGATGAAAGACGGAAGTGTTGTTGCTATCAAGAAACTCATTCGTGTCACAGGTCAGGGAGACAGGGAGTTCATAGCCGAAATGGAAACGATCGGGAAGATTAAGCACAGGAACCTTGTTCCACTACTTGGTTACTGTAAAGTTGGAGATGAAAGG 363 0.4518 MREKYVESLPTSGTSSWKLSTFPEPLSINVATFEKPLRKLTFAHLLEATNGFSSESLIGSGGFGEVYKAKMKDGSVVAIKKLIRVTGQGDREFIAEMETIGKIKHRNLVPLLGYCKVGDER 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme273034g00001 121 Pfam Protein kinase domain 53 117 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme273034g00001 121 FunFam serine/threonine-protein kinase BRI1-like 2 13 121 - -
Trme273034g00001 121 ProSiteProfiles Protein kinase domain profile. 52 121 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme273034g00001 121 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 24 116 - -
Trme273034g00001 121 Gene3D Phosphorylase Kinase; domain 1 14 121 - -
Trme273034g00001 121 SUPERFAMILY Protein kinase-like (PK-like) 18 119 IPR011009 -
Trme273034g00001 121 ProSitePatterns Protein kinases ATP-binding region signature. 58 81 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme273034g00001 Trme-Chr273034 1 363 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme273034g00001 2 121 Receptor kinase-like Gene Family AT1G55610 87.500 3.53e-71 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Trme273034g00001 Pkinase 2.7e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme273034g00001 - - lja:Lj0g3v0359679.1 228.024