Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme27301g00001 ATGGTTGTTTCATGGATTCAGGGTGAAAGCAAATGTGCTCTTGTGTATGGTCAAATGAACGAACCCCCTGGTGCTCGTGCCCGTGTTGGTCTTACTGGTCTTACCGTCGCTGAACACTTCCGCGATGCTGAAGGACAAGATGTGCTTCTTTTTGTTGACAACATTTTCCGCTTCACTCAAGCAAATTCAGAGGTGTCTGCTTTGCTTGGTCGTATTCCATCTGCTGTTGGTTACCAACCAACATTATCTACTGATCTTGGAGGTCTTCAAGAACGTATTACAACCACCAAGAAAGGTTCAATTACATCTGTCCAAGCTATCTATGTGCCTGCTGATGACTTGACAGATCCTGCTCCTGCTACCACCTTTGCTCACTTGGATGCTACAACTGTGTTATCAAGACAGATTTCTGAGCTTGGTATCTATCCTGCTGTTGATCCATTGGATTCAACATCTCGTATGCTTTCCCCACTTATTTTGGGTGATGAGCACTACCAAACCGCTCGTGGTGTACAACAAGTTCTTCAAAACTACAAGAATCTTCAAGATATCATTGCTATTTTGGGAATGGATGAGCTCAGTGAAGATGATAAATTGACTGTTGCTCGCGCCCGTAAAATTCAACGTTTCTTAAGCCAGCCTTTCCATGTGGCAGAAGTCTTCACTGGTGCCCCAGGCAAATATGTTGAATTGAAGGAGAACACTAAAAGTTTCCAG 717 0.4393 MVVSWIQGESKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFVDNIFRFTQANSEVSALLGRIPSAVGYQPTLSTDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPLILGDEHYQTARGVQQVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKENTKSFQ 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme27301g00001 239 ProSitePatterns ATP synthase alpha and beta subunits signature. 143 152 IPR020003 GO:0005524
Trme27301g00001 239 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 11 152 IPR000194 GO:0005524
Trme27301g00001 239 FunFam ATP synthase subunit beta 155 239 - -
Trme27301g00001 239 CDD ATP-synt_F1_beta_C 159 239 - -
Trme27301g00001 239 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 158 IPR027417 -
Trme27301g00001 239 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 155 239 - -
Trme27301g00001 239 Gene3D - 2 154 IPR027417 -
Trme27301g00001 239 Gene3D - 155 239 IPR024034 -
Trme27301g00001 239 PANTHER ATP SYNTHASE 9 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme27301g00001 Trme-Chr27301 242 1186 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme27301g00001 11 213 Primary Pumps ATPases(2) AT1G78900 29.167 6.42e-21 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme27301g00001 K02133 - pda:103705612 442.195