Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme27251g00001 | ATGCAGATTTCTGAAAAGAAAGATCCTTCAATCAACTCTTCCAAGAGCCATTTGAAAGCACTTAACTGGCAAGAACGACGAAAAATTGAAAGAGAAAGAAAGCAAATACAAGAGGATGAACAAACATTAGCAAATGTTGAAGCTCCAATACCACAATCCAACATTGGGTTTAAGCTTCTCAAACAAATGGGTTATACACCAGGTTCTGCTCTTGGCAAGCAGGGCTCAGGCAGGGCTGAACCGGTGGGGATTGAAATTCGACGGTCACGAGCAGGTATAGGCTTAGAGGATCCCCACAAGGAGAAGATGAAAAGGGAGGAAATCACGATCAAACAGAAAAGGAAGAATGAGCAGGCTCTGATGGAAGAATTTGGGTCTAGGCAGAAATCACGGTGGCAAAGTAGGAGGATTATTGTTAATTTCAACAAGGCTAAGGCTGCCCTTGACCAATTGGAGAATCGGGATATTGTGGANTNNNNNNNNNNTNNNNNNNNNNCAGAGGGTGAAGATGGAGAAGAGGAGGAAGAAATAACAGAAGAGGGCTTGCTCGATGTTTTGATGAAACTAAGGGATGAGTTCAATTACTGCCTCTTCTGCGGATGCAAA | 606 | 0.4191 | MQISEKKDPSINSSKSHLKALNWQERRKIERERKQIQEDEQTLANVEAPIPQSNIGFKLLKQMGYTPGSALGKQGSGRAEPVGIEIRRSRAGIGLEDPHKEKMKREEITIKQKRKNEQALMEEFGSRQKSRWQSRRIIVNFNKAKAALDQLENRDIVXXXXXXXXXEGEDGEEEEEITEEGLLDVLMKLRDEFNYCLFCGCK | 202 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme27251g00001 | 202 | Coils | Coil | 103 | 123 | - | - | |
| Trme27251g00001 | 202 | Pfam | G-patch domain | 52 | 95 | IPR000467 | GO:0003676 | |
| Trme27251g00001 | 202 | PANTHER | UNCHARACTERIZED | 6 | 202 | IPR039249 | - | |
| Trme27251g00001 | 202 | Pfam | Domain of unknown function (DUF4187) | 169 | 202 | IPR025239 | - | |
| Trme27251g00001 | 202 | MobiDBLite | consensus disorder prediction | 20 | 40 | - | - | |
| Trme27251g00001 | 202 | MobiDBLite | consensus disorder prediction | 1 | 45 | - | - | |
| Trme27251g00001 | 202 | SMART | G-patch_5 | 50 | 96 | IPR000467 | GO:0003676 | |
| Trme27251g00001 | 202 | ProSiteProfiles | G-patch domain profile. | 52 | 98 | IPR000467 | GO:0003676 | |
| Trme27251g00001 | 202 | Coils | Coil | 26 | 46 | - | - | |
| Trme27251g00001 | 202 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme27251g00001 | 44 | 94 | C2H2 Transcription Factor Family | AT5G26610 | 45.098 | 4.33e-07 | 47.4 |