Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme27245g00001 ATGGAGTCAATTAGACATAACTTCGATGCAGCTGTTGGAGATGTTACAATTGTCCCAAACAGAACAAGGCTTTTGGATTTCACTCAACCTTTTATGGAATCCGGGCTTGTAGTTGTTGTTCCTGTCAAAGAAATCAAATCAAGCCCTTGGGCTTTTCTCAAGCCATTCACTGCTCAAATGTGGTGTGTTACTGGCGCCTTTTTTCTTTTTGTCGGAGCTGTTGTATGGATTCTTGAGCACAGACACAATCCTGAGTTCCGAGGTCCACCGAAGAAGCAACTTATGACAATCTTTTGGTTTACTTTCTCAACAATGTTTTTCTCACACAGAGAGAACACTGTGAGCGGTCTTGGGCGATTCGTGCTAATCATATGGCTTTTTGTAGTATTAATTATCAATTCAAGCTACACGGCAAGCTTAACATCCATCCTCACAGTGCAGCAACTATCCTCACAAATTGAAGGAATTGATAGCTTGATATCAGGTACTCAACCGATTGGAATTCAAGACGGGTCATTTGCAAGGAGATATCTGATAGATGAACTCAATATACATCCATCTAGGATAGTTTCATTGAAAGATCCAAAGGCGTATGTCGATGCCCTTACGCGTGGACCAAAAGGCGGAGGAGTTGTGGCTATTGTTGATGAGCTTCCTTATATTGAAATCTTTATGTCTAGTACCAACTGCAAGTTCAGAACTGTTGGACAGGAGTTCACTAAAAGTGGTTGGGGATTTGTAAGT 744 0.414 MESIRHNFDAAVGDVTIVPNRTRLLDFTQPFMESGLVVVVPVKEIKSSPWAFLKPFTAQMWCVTGAFFLFVGAVVWILEHRHNPEFRGPPKKQLMTIFWFTFSTMFFSHRENTVSGLGRFVLIIWLFVVLIINSSYTASLTSILTVQQLSSQIEGIDSLISGTQPIGIQDGSFARRYLIDELNIHPSRIVSLKDPKAYVDALTRGPKGGGVVAIVDELPYIEIFMSSTNCKFRTVGQEFTKSGWGFVS 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme27245g00001 248 FunFam Glutamate receptor 208 244 - -
Trme27245g00001 248 SUPERFAMILY Periplasmic binding protein-like II 6 247 - -
Trme27245g00001 248 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 4 246 IPR015683 -
Trme27245g00001 248 SMART GluR_14 1 248 IPR001320 GO:0015276|GO:0016020
Trme27245g00001 248 Pfam Bacterial extracellular solute-binding proteins, family 3 6 239 IPR001638 -
Trme27245g00001 248 Gene3D - 1 49 - -
Trme27245g00001 248 Pfam Ligand-gated ion channel 58 227 IPR001320 GO:0015276|GO:0016020
Trme27245g00001 248 Gene3D - 50 170 - -
Trme27245g00001 248 FunFam Glutamate receptor 49 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme27245g00001 Trme-Chr27245 1 1064 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme27245g00001 2 247 Ion Channels AT1G05200 76.829 1.83e-138 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme27245g00001 K05387 - gmx:100799912 437.573