Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2722g00001 CTTCAACAAAGTACCTCTGAACAAGTTTGCTTATCTGATGATAAATCAGAAATCAAATGTCCTCAAAATGTTAAAAATGAAGCTGGAGAAATGAGCGATGCAGTAACTGCCCTTGCTGTTGAAGAGCAAACGCAATCCGTTCCTGCTCAAGTGAACACAGATTTTGTGAACAAGCTACTTGATACGCCTTATGGAGATGTTACGAAAAATATTAGTTCTAAAAATGAACCTGGTGAAATGAGTGATGTAGTAACTGGGTTTGTTGAAGACCATAAGCAATCCTTTCCTGCTCAAGTGAACACAGATTCTGTGAATGAGCCACTCGATACGCCTTCTGGAGATGTTACGAAAAATATTAGTTCTAAAAACGAACCTGACCAAACGCAATCCGTTCCTGCTCAAGTGAACACTAATTCTGGGAAGAATGAGATACTCGATACGTCTTCTGGTGACGCTGCAAAAAGTATTAGTTCTGATTGTTCAGAAAGAAAGTCTAATAACCCGCCTCAGTTGCGAGAGAAACATGGGTATAAAAAAAACTCAAAATTATCGAAGAAGTATATATTAAGGTCGTTAGGAAGCAGTGACAGAACTCTGCGGTCAAGGACAAAAGATAATAAACCTAAAGATCCTGAACCAATTAATACTGTTGCTGATGTTAATAATGATGAAACAAAGACAAAAGAAAGGAAGAAGAAGAAGAAGAAGAAAAAGACAAGAAAAGAGGGAATTAATGATCAATTTTCTAGAATCAGAGCTCAATTGAGATATTATCTGAACCGAATAAGCTACGAACAAAACTTGATTGATGCTTATTCTGCTGAGGGATGGAGAGGAAGCAGTATGGAAAAGTTAAAGCCTGAGAAGGAGATTCAACGGGCTAAGTCTGAAATTCTTCGACGTAAATTAAAAATTAGGGATCTATTTCAAAATTTGGATTCATTGTGCGCTGAAGGAAGGCTTCCCGAATCTTTGTTTGATTCCGAGGGAGAGATTGATAGTGAGGATATATTTTGTGCAAAATGCCAGACCAAAGTGTTGGCCACTAATAATGATATAATTCTCTGTGATGGTGCTTGTGACCGTGGATATCACCAGCTCTGTTTGGATCCTCCATTGTTAACCGAAGACATACCACCTGGCGATGAGAGTTGGTTATGCCCTGGATGTGATTGCAAAGATGACTGCATCGAACTTGTTAATGACTTGTTAGGGACAAGTCTCTCTCTTACCGACACCTGGGAGGTCAGTGGTAAAACATAG 1263 0.3895 LQQSTSEQVCLSDDKSEIKCPQNVKNEAGEMSDAVTALAVEEQTQSVPAQVNTDFVNKLLDTPYGDVTKNISSKNEPGEMSDVVTGFVEDHKQSFPAQVNTDSVNEPLDTPSGDVTKNISSKNEPDQTQSVPAQVNTNSGKNEILDTSSGDAAKSISSDCSERKSNNPPQLREKHGYKKNSKLSKKYILRSLGSSDRTLRSRTKDNKPKDPEPINTVADVNNDETKTKERKKKKKKKKTRKEGINDQFSRIRAQLRYYLNRISYEQNLIDAYSAEGWRGSSMEKLKPEKEIQRAKSEILRRKLKIRDLFQNLDSLCAEGRLPESLFDSEGEIDSEDIFCAKCQTKVLATNNDIILCDGACDRGYHQLCLDPPLLTEDIPPGDESWLCPGCDCKDDCIELVNDLLGTSLSLTDTWEVSGKT 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2722g00001 420 CDD PHD_PRHA_like 338 390 IPR045876 -
Trme2722g00001 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 321 401 IPR013083 -
Trme2722g00001 420 MobiDBLite consensus disorder prediction 94 165 - -
Trme2722g00001 420 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 118 415 - -
Trme2722g00001 420 ProSiteProfiles Zinc finger PHD-type profile. 336 393 IPR019787 -
Trme2722g00001 420 FunFam Homeobox protein HAT3.1 319 398 - -
Trme2722g00001 420 SUPERFAMILY FYVE/PHD zinc finger 328 396 IPR011011 -
Trme2722g00001 420 SMART PHD_3 338 391 IPR001965 -
Trme2722g00001 420 MobiDBLite consensus disorder prediction 63 245 - -
Trme2722g00001 420 ProSitePatterns Zinc finger PHD-type signature. 339 390 IPR019786 -
Trme2722g00001 420 MobiDBLite consensus disorder prediction 197 212 - -
Trme2722g00001 420 Pfam PHD-finger 338 393 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme2722g00001 Trme-Chr2722 2 2571 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2722g00001 234 415 Homeobox Transcription Factor Family AT3G19510 69.189 1.90e-92 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trme2722g00001 PHD 1.8e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme2722g00001 - - cam:101500744 561.222