Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme27229g00001 ATGAACAATCCTTTTTCAATTGAAATGATTTTAATGGACTCTGCTGGTGGAAAGATTCACGCAACTATTAAGAAAACACTAATTTATAAGTTTAAGCATGAACTAATTGAAGGAAAAGTTTACAGTTTTGAAAATTTGGGTGTTTCTATTAATGGTGGAGCTTATCGGACTACTCATCAMCGTTATAAGTTGAATTTCCAGTTTTCTTCTTYGGTTCAGAGGCTTTCTAATGTTGATGTTGTCAAATCTCCATTTCAATTTGTTCCTATATCTGATGTTGTTGGAGGTTCTTATGACACTGATTATTTAGTTGATGTTATTGGAGTTCTCACTGGTGTTGGATCTGAGAGAGAGATAACAAATCAGAATGGAAGTACAACTAAGCTCAATGTCATTGCCTTAGAGGCAGATGGGCATAAGATTCAGTGCACTTTGTTTGGACCCTATGTGGATGAGCTAAATACTTTTATTGCTGCTGGTGATTATAACAATGCTGTTGTTATTGTGCAACTTGCAAAAGCAAAAACATTTCAAGACAAGATTCATATACAGAATTGTATGAATTGTACCCGATTGTTTTTTAACCCAAACTGTCAAGAAAGTGACATATTGAGGGAAAGCTTGCCTGAAAGTCTAGAGAGTCCTTCTCCAATGACTCTAACTCAGATTCATGTTGAGCCTGGAGTTAGACCAATTGATGAGTTTCTTTACAATACACCAA 721 0.3523 MNNPFSIEMILMDSAGGKIHATIKKTLIYKFKHELIEGKVYSFENLGVSINGGAYRTTHXRYKLNFQFSSXVQRLSNVDVVKSPFQFVPISDVVGGSYDTDYLVDVIGVLTGVGSEREITNQNGSTTKLNVIALEADGHKIQCTLFGPYVDELNTFIAAGDYNNAVVIVQLAKAKTFQDKIHIQNCMNCTRLFFNPNCQESDILRESLPESLESPSPMTLTQIHVEPGVRPIDEFLYNTP 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme27229g00001 240 CDD RPA1_DBD_A_like 1 72 - -
Trme27229g00001 240 SUPERFAMILY Nucleic acid-binding proteins 85 211 IPR012340 -
Trme27229g00001 240 Gene3D - 78 214 IPR012340 -
Trme27229g00001 240 CDD RPA1_DBD_B_like 105 200 - -
Trme27229g00001 240 SUPERFAMILY Nucleic acid-binding proteins 6 79 IPR012340 -
Trme27229g00001 240 Gene3D - 2 77 IPR012340 -
Trme27229g00001 240 Pfam Domain of unknown function DUF223 8 103 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme27229g00001 Trme-Chr27229 1 1166 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme27229g00001 11 205 Core DNA Replication Machinery Family AT2G06510 25.743 1.42e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme27229g00001 - - tpra:123915045 404.831