Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme27206g00001 ATGCCGGTTTTTAGTAATGGATTGAAACCTATGGTTGATGGGAATTCTCTGCTGAATGGTGGTGGTAGCTCCAACAGTCCTTCATCGGGGAAAAACAGTACATCGGGTGGATCTGGGATTATTGGTGGAGATACACATGGACACTCGAATTCAAGTTCAAGTGATTCGGTTGAAACGAAAAAATCCAAAAGGAAAGGGTTGGTTTTGATTGTAGCTCCCATTGCTGGTGTGGCGGCTGCTGCTTTTCTGTTGATACCGCTTTACGCGTATTGTTTCAGAAGGACAAAGGATGGCTTCCAGGCTCCAAGTTCACTCGTAGTTCACCCTAGAGATCCATCTGATTCAGACAGTACCGTAAAGATAGCTATTGCTAATAATGCCAATGGAAGTGTTTCCACTTTGACAGGGAGTGGAACCGGGAGTAGAAATAGCAGTGCAATTGGCGATTCTCATGCCATTGAAGCTGGAAATCTTGTCATATCCGTTCAAGTTCTAAGAAACGTGACAAAGAATTTCGCTCCTGAGAACGAGCTTGGCCGCGGTGGATTCGGAGTTGTTTATAAAGGAGAGTTGGATGATGGGACTAAGATTGCGGTAAAAAGAATGGAAGCGGGTGTGATCACCAATAAAGCCTTGGATGAATTTCAGGCTGAAATTGCAGTTCTGTCGAAAGTTCGACATCGGCATCTAGTTGCCCTTATTGGTTACTCCATTGAAGGTAATGAGAGGATTCTAGTGTATGAGTATATGCCACAAGGTGCTCTCAGCCAGCATCTTTTCCATTGGAAGAGCTTTGGACTTGAGCCTCTCTCTTGGAAGAGGAGGCTCAATATTGCATTGGATGTTGCTAGAGGAATGGAGTATCTTCATACACTTGCTCACCAGAGCTTCATTCATAGAGATCTTAAGTCCTCAAATATTTTGCTTGCTGATGATTTTAGAGCAAAAGTCTCAGATTTTGGATTGGTAAAACTTGCTCCTAATGGCGAAAAATCTGTAGTGACCAAACTTGCTGGAACCTTTGGATACTTGGCTCCAGAATATGCAG 1048 0.4361 MPVFSNGLKPMVDGNSLLNGGGSSNSPSSGKNSTSGGSGIIGGDTHGHSNSSSSDSVETKKSKRKGLVLIVAPIAGVAAAAFLLIPLYAYCFRRTKDGFQAPSSLVVHPRDPSDSDSTVKIAIANNANGSVSTLTGSGTGSRNSSAIGDSHAIEAGNLVISVQVLRNVTKNFAPENELGRGGFGVVYKGELDDGTKIAVKRMEAGVITNKALDEFQAEIAVLSKVRHRHLVALIGYSIEGNERILVYEYMPQGALSQHLFHWKSFGLEPLSWKRRLNIALDVARGMEYLHTLAHQSFIHRDLKSSNILLADDFRAKVSDFGLVKLAPNGEKSVVTKLAGTFGYLAPEYA 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme27206g00001 349 ProSitePatterns Protein kinases ATP-binding region signature. 178 200 IPR017441 GO:0005524
Trme27206g00001 349 SUPERFAMILY Protein kinase-like (PK-like) 152 348 IPR011009 -
Trme27206g00001 349 FunFam Os07g0541700 protein 250 340 - -
Trme27206g00001 349 MobiDBLite consensus disorder prediction 15 59 - -
Trme27206g00001 349 SMART serkin_6 172 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme27206g00001 349 PANTHER OSJNBA0070M12.3 PROTEIN 1 349 - -
Trme27206g00001 349 Gene3D Transferase(Phosphotransferase) domain 1 250 349 - -
Trme27206g00001 349 ProSiteProfiles Protein kinase domain profile. 172 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme27206g00001 349 Gene3D Phosphorylase Kinase; domain 1 136 249 - -
Trme27206g00001 349 ProSitePatterns Serine/Threonine protein kinases active-site signature. 297 309 IPR008271 GO:0004672|GO:0006468
Trme27206g00001 349 FunFam receptor protein kinase TMK1 134 249 - -
Trme27206g00001 349 Pfam Protein kinase domain 175 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme27206g00001 349 MobiDBLite consensus disorder prediction 17 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme27206g00001 Trme-Chr27206 21 1068 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme27206g00001 74 349 Trihelix Transcription Factor Family AT1G70460 40.541 4.81e-60 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Trme27206g00001 Pkinase 3.2e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme27206g00001 K00924 - vvo:131602560 536.184