Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme27185g00001 TTTGATTTTGCACCCTTCATGGTGTTGATTATTGCCATACTAAATGATGGTACCATTATGACAATATCGAAGGATAGAGTGGTACCATCTCCACAACCAGACAGTTGGAAACTGAGAGAGATATTTGCAACTGGTGTTGTGCTAGGTAGCTACATGGCACTAATGACAGTAGTGTTTTTCTGGCTCATGAAGGATACCGATTTCTTCTCGGACAAGTTTGGTGTGAGGTCTATCAGACACAGCCCTGATGAAATGATGGCAGCCCTCTACCTACAAGTCAGTATTATAAGCCAGGCACTAATTTTTGTCACCAGGTCTCGTAGCTGGTCCTTTGTTGAAAGACCCGGTCTTCTCCTATTGGGTGCTTTTATGATTGCTCAGCTGGTGGCAACTTTTATAGCAGTATATGCTAATTGGAGCTTCGCGAGAATTAAGGGAATGGGATGGGGTTGGGCTGGTGTAATATGGGTGTACAGTATAGTGACATATATCCCTCTTGATATACTCAAATTCGTAATCCGCTATGTTCTAAGTGGCAAAGCTTGGGATAATCTTTTGGAGAACAAGGTAATTGTTCCTTCCAAC 585 0.4256 FDFAPFMVLIIAILNDGTIMTISKDRVVPSPQPDSWKLREIFATGVVLGSYMALMTVVFFWLMKDTDFFSDKFGVRSIRHSPDEMMAALYLQVSIISQALIFVTRSRSWSFVERPGLLLLGAFMIAQLVATFIAVYANWSFARIKGMGWGWAGVIWVYSIVTYIPLDILKFVIRYVLSGKAWDNLLENKVIVPSN 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme27185g00001 195 PANTHER CALCIUM-TRANSPORTING ATPASE 1 191 - -
Trme27185g00001 195 SUPERFAMILY Calcium ATPase, transmembrane domain M 3 178 IPR023298 -
Trme27185g00001 195 Gene3D - 1 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme27185g00001 Trme-Chr27185 54 1222 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme27185g00001 1 190 Primary Pumps ATPases AT2G24520 83.684 2.36e-112 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme27185g00001 K01535 - gmx:100785442 359.377