Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme27183g00001 ATGACCAACAACTTCGAAGTCAAACTAGGACAAGGTGGTTATGGTGTTGTGTACAAAGGAAAGCTACTCGATGACCGCCTTGTGGCCATAAAGATATTGAATGCATCCAAAGGAAATGGTGAAGAATTTATGAACGAGGTTTCTAGCATTACTAAAACCTCTCACATTAATGTTGTTGCCCTTCTTGGATTTTGTTTTGACGGTAGCAAAAAAGCTTTGATCTATGAATTAATGTCCAATGGTTCGCTTGACAAATTTATTTACAATAACCAACCCGAAACCATTCAATCTCTGAGTTGGGAGATTCTTTATCAAATTGCTAAAGGGATAGCTCGAGGGCTAGAGTACTTGCATAAGGGCTGTAGCACACGAATTTTACATTTTGACATCAAACCACATAACATTCTTTTAGATGAGAATTTTTGTCCAAAGATATCGGATTTTGGGCTAGCAAGACTTTGTCCCAAGAAAGAGAGCATTATTTCAATGTCAGATGCTAGAGGGACAATGGGATATGTAGCTCCTGAGTTGTGGAATAGAAATTTTGGAGGTGTTTCACATAAGTCTGATGTTTATAGTTTCGGAATGATGCTGATGGAAATGGTTGGAGGGAGGAAAAATGTTATTGCTGATGCAAGTCAAACAAGTGAGATATACTTTCCTCATTGGGTATACAAGAAGCTTGATCTAGGCAGTGATTTGATACCAGGCGAAGTTATTACCGTAGAAGAAG 733 0.3834 MTNNFEVKLGQGGYGVVYKGKLLDDRLVAIKILNASKGNGEEFMNEVSSITKTSHINVVALLGFCFDGSKKALIYELMSNGSLDKFIYNNQPETIQSLSWEILYQIAKGIARGLEYLHKGCSTRILHFDIKPHNILLDENFCPKISDFGLARLCPKKESIISMSDARGTMGYVAPELWNRNFGGVSHKSDVYSFGMMLMEMVGGRKNVIADASQTSEIYFPHWVYKKLDLGSDLIPGEVITVEE 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme27183g00001 244 SMART serkin_6 3 235 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme27183g00001 244 Gene3D Phosphorylase Kinase; domain 1 1 77 - -
Trme27183g00001 244 Pfam Protein kinase domain 6 209 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme27183g00001 244 FunFam PR5-like receptor kinase 78 235 - -
Trme27183g00001 244 SUPERFAMILY Protein kinase-like (PK-like) 6 223 IPR011009 -
Trme27183g00001 244 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 230 IPR045874 GO:0004672
Trme27183g00001 244 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Trme27183g00001 244 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Trme27183g00001 244 Gene3D Transferase(Phosphotransferase) domain 1 78 236 - -
Trme27183g00001 244 ProSiteProfiles Protein kinase domain profile. 3 244 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme27183g00001 Trme-Chr27183 29 761 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme27183g00001 1 229 Receptor kinase-like Gene Family AT4G18250 60.515 7.11e-101 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trme27183g00001 Pkinase 1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme27183g00001 - - tpra:123887353 459.914