Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme27176g00001 CTAGACGAATGGAGGATTCGGAAAAGAGATACAGAGGAGTGGATGAGGCATCGACAGTTACCTCCAGATTTGCAAGAGCGTATCCGTCGCTTTGTTCAATATAAATGGCTAGCTACAAGAGGAGTAGATGAAGAGTCCATACTTCTTTCCTTACCTTTGGATCTACGCCGTGAAATTCAACATCACTTGTGTCTCTCTCTAGTGCGACGTGTGCCATTTTTCTCACAAATGGATGATCAACTACTTGATGCAATATGTGAACGCCTTGTATCATCATTAAGTACACAAGGCACATATATATTTCAAGAAGATGATCCAGTAGATGAAATGTTGTTTATCATTAGAGGTACATTAGAGAGTTCTACAACCAATGGAGGAAGGTATGGATTCTTCAATTCAATCACACTAAGGCCAGGAGACTTTTGTGGAGAAGAATTGTTAACATGGGCTTTATTACCAAACTCAACCCTCAATTTACCTTCCTCTACTCGTACTGTAAAAGCTCTTACCGAAGTAGAAGCTTTTGCGCTACAAGCAGAGGATCTAAAATTTGTGGCGAGTCAGTTCAAGCGGCTTCACAGCAAGAAACTTCAGCATGCTTTTAGGTATTATTCACAGCAATGGAGAACATGGAGTTCTTGTTTCATACAAGCAGCATGGAGAAAGCATCAGAAAAGGAAGGCAGCAAGGGAATTGGCAATTAAAGAGGGAATTTACTTGGAGGATCCTGAGATTGAGGAATCATCAGGGAATGGTAAAAATGTTAAAAATCTTGGTGCTACTGTTTTGGCTTCAAGATTTGCTGCAAATACAAAGAAAGGGAATAAGATTCAAGATAGTGATCCTGTGCCGCAGTTGTTTAAACCTGATGAACCTGATTTCTCTCATGGTGGTGTTTAG 900 0.4033 LDEWRIRKRDTEEWMRHRQLPPDLQERIRRFVQYKWLATRGVDEESILLSLPLDLRREIQHHLCLSLVRRVPFFSQMDDQLLDAICERLVSSLSTQGTYIFQEDDPVDEMLFIIRGTLESSTTNGGRYGFFNSITLRPGDFCGEELLTWALLPNSTLNLPSSTRTVKALTEVEAFALQAEDLKFVASQFKRLHSKKLQHAFRYYSQQWRTWSSCFIQAAWRKHQKRKAARELAIKEGIYLEDPEIEESSGNGKNVKNLGATVLASRFAANTKKGNKIQDSDPVPQLFKPDEPDFSHGGV 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme27176g00001 299 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 2 294 - -
Trme27176g00001 299 Gene3D Jelly Rolls 71 191 IPR014710 -
Trme27176g00001 299 Gene3D Helix hairpin bin 2 64 - -
Trme27176g00001 299 SMART cnmp_10 73 204 IPR000595 -
Trme27176g00001 299 ProSiteProfiles cAMP/cGMP binding motif profile. 73 203 IPR000595 -
Trme27176g00001 299 MobiDBLite consensus disorder prediction 273 299 - -
Trme27176g00001 299 Pfam Cyclic nucleotide-binding domain 96 184 IPR000595 -
Trme27176g00001 299 FunFam Cyclic nucleotide-gated ion channel 1 71 189 - -
Trme27176g00001 299 CDD CAP_ED 73 204 IPR000595 -
Trme27176g00001 299 FunFam Cyclic nucleotide-gated ion channel 1 1 64 - -
Trme27176g00001 299 SUPERFAMILY cAMP-binding domain-like 5 198 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme27176g00001 Trme-Chr27176 2 1103 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme27176g00001 1 295 Ion Channels AT5G14870 70.062 1.54e-160 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme27176g00001 K05391 - lja:Lj0g3v0043729.2 514.612